Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0371 ATGACAAGGCAAAAAATAGAGATAAAGAAAATAGACAACATAGCAGCAAGGCAAGTGACATTTTCAAAGAGAAGAAGAGGGCTATTCAAAAAAGCTCATGAACTTGCAACTCTTTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTATTTGACTATTCTTCCTCAAGCATGCAGGAGCTGCTGAGAAGGCATAACATGCTGCCAGAACTAAATAACATTGGCCAACCTCCATCTCAGCTTGAAAAGGAAGTCTATGCTAAATTGACTGAGGAATTTGCAGCCAAGAGCAAAGAACTTAAGTATATGAGAGGAGAGGAGCTTCAAGGAATGGGAATAGAAGACTTAAAGAAGCTGGAGAAATTGCTTGAAGTTAGTTTGAATCGTGTAATAGAGACCAAGGATGAAAAGTTTATAAAAGAGATTGGTGCAGGAAAGGAGAAGGTTACAAGCTTCTTTATCTCTATTTCTTCTTAG 489 38.04 MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMQELLRRHNMLPELNNIGQPPSQLEKEVYAKLTEEFAAKSKELKYMRGEELQGMGIEDLKKLEKLLEVSLNRVIETKDEKFIKEIGAGKEKVTSFFISISS 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2468492 2482384 + Sed0025303.2 Sed13g0371 733881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0371 162 ProSiteProfiles K-box domain profile. 83 162 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed13g0371 162 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0371 162 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0371 162 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed13g0371 162 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0371 162 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0371 162 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0371 162 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0371 162 Gene3D - 15 104 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0371 162 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0371 162 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0371 162 FunFam Transcription factor, MADS-box 13 82 - -
Sed13g0371 162 Coils Coil 120 140 - -
Sed13g0371 162 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 138 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed13g0371 162 Pfam K-box region 86 153 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1175 Sed-Chr7:8780440 Sed13g0371 Sed-Chr13:2468492 8.10E-68 dispersed
Sed13g0371 Sed-Chr13:2468492 Sed14g1003 Sed-Chr14:19462453 8.60E-38 dispersed
Sed13g0370 Sed-Chr13:2468492 Sed13g0371 Sed-Chr13:2468492 1.20E-76 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40339 PF01486 K-box 3.20E-10 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0371 - - - 0.0