Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0384 ATGGGAAGAGGGAAGATTGTGATAAGAAGGATTGATAATTCAACAAGCAGGCAAGTGACTTTTTCAAAGAGAAGAAGTGGATTGTTGAAAAAAGCTAAAGAGCTTTCAATTCTTTGTGATGCTGAAATTGGATTGATCATTTTTTCAAGTACTGGAAAACTCTATGATTATTCCAGTACCAGCATAAGATCGATTACGGATCGTTACAACAAGATGAAAGAGGAGCAAAATCAGGCGATGAACTCTGCTTCAGAACTCCAGTTTTGGAAAACAGAGGCAGCTGCTTTGAAGCAACAACTGCATTACTTGCAAGAATGTCACAGACAATTGATGGGTGAAGAACTATCTGGCCTGAGCGTCAAAGATCTACAAAATCTGGAAAGCCAGTTGGAAATGAGTTTGAAAGGTGTCCGTGTGAAAAAGGAAAAGATTTTAAGTGATGAAATTACTGAACTACGACAAAAGGGGGTTCATATGCACCAAGAAAATGTGGAACTCTACAAGAAACTAGACATGATTCGCAAGGAAAATGAAGAACTGCAAATGAGGGTTTATGGACCAATGGAATTGGATAAAACAAGCAGTAGCTCAGTTCATCAATTCACAATCACCGATAGATACAGTATGCCTTCTCTACAGCTAAGACAGCCAGAACCACAAAACAACAAAACACCACTACCAGGGATAAAGCTGGGATTGCAACTGCAATAA 711 38.96 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEIGLIIFSSTGKLYDYSSTSIRSITDRYNKMKEEQNQAMNSASELQFWKTEAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITELRQKGVHMHQENVELYKKLDMIRKENEELQMRVYGPMELDKTSSSSVHQFTITDRYSMPSLQLRQPEPQNNKTPLPGIKLGLQLQ 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2566179 2581875 + Sed0012885.1 Sed13g0384 733894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0384 236 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0384 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed13g0384 236 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0384 236 Coils Coil 163 183 - -
Sed13g0384 236 MobiDBLite consensus disorder prediction 209 236 - -
Sed13g0384 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0384 236 Gene3D - 13 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0384 236 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed13g0384 236 MobiDBLite consensus disorder prediction 209 223 - -
Sed13g0384 236 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Sed13g0384 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0384 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0384 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0384 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0384 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0384 236 Pfam K-box region 82 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed13g0384 236 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1544 Sed-Chr5:29152538 Sed13g0384 Sed-Chr13:2566179 7.40E-62 dispersed
Sed07g1165 Sed-Chr7:8713297 Sed13g0384 Sed-Chr13:2566179 1.10E-106 dispersed
Sed07g1167 Sed-Chr7:8713297 Sed13g0384 Sed-Chr13:2566179 2.70E-71 dispersed
Sed07g1168 Sed-Chr7:8713297 Sed13g0384 Sed-Chr13:2566179 2.40E-84 dispersed
Sed10g0803 Sed-Chr10:5806069 Sed13g0384 Sed-Chr13:2566179 3.60E-53 dispersed
Sed13g0384 Sed-Chr13:2566179 Sed14g1017 Sed-Chr14:19692247 3.60E-45 dispersed
Sed14g1002 Sed-Chr14:19462453 Sed13g0384 Sed-Chr13:2566179 9.20E-27 dispersed
Sed14g1003 Sed-Chr14:19462453 Sed13g0384 Sed-Chr13:2566179 1.10E-25 dispersed
Sed13g0384 Sed-Chr13:2566179 Sed07g1163 Sed-Chr7:8713297 9.70E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40340 PF01486 K-box 3.80E-26 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0384 K09264 - csv:101203098 408.683