Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0392 ATGGCCACCGCCGTGTTGCTCCGTTCTCTTCGCCGTCGCGATCTTGCCTCCTCTTCCCTTTCCGCTTACCGATCCTTAACAAGCATTGCCAAGCCATCATGGGCCAAATCCAACCTTAGTCAATCATGGGCAAGTTTGTCCAGGCCATTCAGCACAAAGCCCGCTGGGAATGATGTTATTGGTATTGACTTGGGTACCACCAATTCTTGTGTTTCTGTTATGGAAGGGAAGAATCCAAAAGTTATTGAAAACTCTGAAGGTGCTAGGACTACACCATCGGTGGTTGCTTTCAATCAGAAAGGTGAGCTACTTGTTGGAACACCAGCAAAGAGACAGGCGGTGACAAATCCGACAAATACTGTATTTGGAACCAAGCGTCTGATTGGTAGACGCTTTGATGACCCTCAGACACAGAAGGAAATGAAGATGGTACCATACAAAATAGTCAAAGCTCCAAATGGAGATGCTTGGGTAGAAGCAAATGGGCAGAAGTACTCACCGAGTCAGATTGGTGCTTTTGTTCTAACTAAGATGAAGGAAACTGCTGAAGCCTATCTTGGAAAGAGTGTGTCCAAAGCTGTGATTACTGTTCCAGCTTATTTCAACGATGCACAGAGACAGGCAACAAAGGATGCTGGCAGGATTGCTGGTTTGGATGTTCTTAGAATCATCAATGAGCCCACTGCTGCTGCACTTTCCTATGGAATGAATAACAAGGAAGGTCTAATTGCCGTCTTCGATCTTGGTGGTGGAACATTTGATGTTTCCATCTTGGAGATATCCAATGGTGTTTTTGAGGTTAAAGCAACTAATGGTGACACTTTCTTGGGAGGAGAAGATTTCGACAATGCTCTATTGGACTTCCTGGTTAGCGAGTTCAAGCGAAATGAGGGAATTGACCTTACCATGGACAAGCTTGCCCTGCAGAGACTTAGGGAGGCTGGGGAAAAGGCAAAGATTGAACTATCATCCACATCACAGACTGAAATTAACCTGCCATTTATCACTGCTGATGCATCTGGGGCCAAGCATCTGAACATCACTTTGACCAGGTCGAAGTTTGAAAGCCTTGTTAATCACCTGATTGAAAGGACCAGAGCCCCATGCAAAAGTTGTTTGAAGGATGCTGACATTTCTATCAAAGACGTGGATGAAGTGCTTTTAGTTGGTGGAATGACTCGTGTACCTAAGGTGCAAGAAGTTGTCACAGAAATTTTTGGGAAAAGCCCTAGCAAGGGAGTGAATCCTGATGAAGCCGTTGCTATGGGAGCAGCCATTCAGGGTGGTATTCTTCGTGGTGATGTCAAAGAATTGCTTCTTTTGGATGTTACCCCTCTGTCGCTCGGTATTGAGACGCTTGGTGGCATATTTACAAGGCTGATCAGTCGGAACACTACCATTCCAACTAAGAAGAGCCAGGTGTTCTCAACTGCAGCTGACAATCAGACCCAGGTTGGTATCAAGGTATTGCAAGGTGAAAGAGAAATGGCTTCAGACAACAAGCTTTTAGGAGAGTTCGAGTTGGTCGGACTTCCTCCTGCTCCGAGAGGAATGCCTCAAATTGAGGTGACATTTGACATCGATGCCAATGGTATTGTTACCGTCTCGGCCAAAGACAAGGCCACCGGTAAAGAGCAACAAATCACCATTCGATCTTCAGGAGGACTCTCAGATGATGAAATAGAGAAAATGGTGAAGGAAGCAGAGCTGCACGCCCAGATGGACCAAGAGAGGAAATCTCTTATCGACATCAGAAACAGTGCAGACACTACCATCTACAGCATCGAGAAGAGCTTAGGCGAATACAGGGAGAAAATACCAAGTGAGGTCGCCAAGGAAATCGAGGATGCCGTGGCAGACTTGAGGAAGGCAATGTCAGGAGACGACATCGAAGAGATCAAGTCTAAACACGACTTGGCCAACAAAGCTGTTTCCAAGATTGGGCAACACATGTCTGGTGGCGGATCAGGTGGAGGTGATCCTGCTTCTGGAGGAGCTCAGGGTGGCGAACAAGCTTCTGAAGCCGAGTACGAAGAGGTGAAGAAATAA 2049 46.41 MATAVLLRSLRRRDLASSSLSAYRSLTSIAKPSWAKSNLSQSWASLSRPFSTKPAGNDVIGIDLGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVKAPNGDAWVEANGQKYSPSQIGAFVLTKMKETAEAYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVSEFKRNEGIDLTMDKLALQRLREAGEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFESLVNHLIERTRAPCKSCLKDADISIKDVDEVLLVGGMTRVPKVQEVVTEIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLISRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKLLGEFELVGLPPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSDDEIEKMVKEAELHAQMDQERKSLIDIRNSADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMSGDDIEEIKSKHDLANKAVSKIGQHMSGGGSGGGDPASGGAQGGEQASEAEYEEVKK 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2609474 2613623 + Sed0007852.1 Sed13g0392 733902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0392 682 ProSitePatterns Heat shock hsp70 proteins family signature 1. 62 69 IPR018181 -
Sed13g0392 682 Gene3D Actin; Chain A, domain 4 278 365 - -
Sed13g0392 682 PRINTS 70kDa heat shock protein signature 86 98 - -
Sed13g0392 682 PRINTS 70kDa heat shock protein signature 383 399 - -
Sed13g0392 682 PRINTS 70kDa heat shock protein signature 251 261 - -
Sed13g0392 682 PRINTS 70kDa heat shock protein signature 437 456 - -
Sed13g0392 682 PRINTS 70kDa heat shock protein signature 58 71 - -
Sed13g0392 682 PRINTS 70kDa heat shock protein signature 193 213 - -
Sed13g0392 682 PRINTS 70kDa heat shock protein signature 109 117 - -
Sed13g0392 682 PRINTS 70kDa heat shock protein signature 518 534 - -
Sed13g0392 682 PRINTS 70kDa heat shock protein signature 414 434 - -
Sed13g0392 682 FunFam Molecular chaperone DnaK 556 655 - -
Sed13g0392 682 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 431 555 IPR029047 -
Sed13g0392 682 MobiDBLite consensus disorder prediction 642 682 - -
Sed13g0392 682 FunFam Heat shock protein 9 122 173 - -
Sed13g0392 682 ProSitePatterns Heat shock hsp70 proteins family signature 3. 386 400 IPR018181 -
Sed13g0392 682 Hamap Chaperone protein DnaK [dnaK]. 56 680 IPR012725 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Sed13g0392 682 FunFam Molecular chaperone DnaK 278 365 - -
Sed13g0392 682 FunFam Chaperone protein DnaK HSP70 427 610 - -
Sed13g0392 682 SUPERFAMILY Actin-like ATPase domain 240 431 IPR043129 -
Sed13g0392 682 FunFam Molecular chaperone DnaK 60 241 - -
Sed13g0392 682 PANTHER HEAT SHOCK PROTEIN 70KDA 59 614 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0140662(InterPro)
Sed13g0392 682 Gene3D - 60 428 - -
Sed13g0392 682 NCBIfam molecular chaperone DnaK 59 651 IPR012725 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Sed13g0392 682 Gene3D - 235 415 - -
Sed13g0392 682 Gene3D - 556 653 IPR029048 -
Sed13g0392 682 Pfam Hsp70 protein 59 651 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Sed13g0392 682 CDD HSPA9-like_NBD 56 431 - -
Sed13g0392 682 FunFam Chaperone protein HscA homolog 242 299 - -
Sed13g0392 682 SUPERFAMILY Actin-like ATPase domain 59 239 IPR043129 -
Sed13g0392 682 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 433 589 IPR029047 -
Sed13g0392 682 ProSitePatterns Heat shock hsp70 proteins family signature 2. 245 258 IPR018181 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1706 Sed-Chr11:32258718 Sed13g0392 Sed-Chr13:2609474 4.80E-186 dispersed
Sed13g0392 Sed-Chr13:2609474 Sed14g0474 Sed-Chr14:4743015 7.00E-150 dispersed
Sed13g0392 Sed-Chr13:2609474 Sed07g1161 Sed-Chr7:8695297 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0392 K04043 - csv:101216102 1186.02