Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g0413 | ATGAGAAAGAGCAGAGGCAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTCCAAGTCACCTTCTCGAAGCGTCGGTCGGGCCTCTTCAAAAAAGCTAGCGAGCTCTCCACGCTCTGCGGTGCAGAGATTGCCATCATCGTCTTTTCGCCAGGGAAGAAGGTGTTCTCCTTTGGCCACCCTAGTGTTGAGGCTCTCATTGACCGCTTTGTGACTCGAAACCCCCCACCGAGCTCCGGTACACTTCAACTAATCGAAGCTCACCGAAATGCCAATGTTCGAGAACTAAATTCGCAACTCACTCAAGTGTCAAACCAATTGGAGATGGAGCGAAAGCGCGGGGAAGAGTTGAACAAACTCCGAAAGGCAAGCCAGGCACAATGCTGGTGGGAACTTCCCATTGAAGAACTGGAATTGCATCAACTCGAACAACTTAAAGCATCTTTGGATGAACTAAAGAAGAATGTCACACAACAAGCTGATCGGATTTTGATTCAAACCTCGAACGGGAATCCGCCACCGCAGTTCTTCCCGACTCCAACGCCTACAAACCCGAACCAACAAGGCGGCGTTTTCGTCATCGATTCGAAGAACATGATCTCTCATCTTCCCTACAACTATGGCCCATATGGATCAAGAGGTTTCTTTTGA | 660 | 49.24 | MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFSFGHPSVEALIDRFVTRNPPPSSGTLQLIEAHRNANVRELNSQLTQVSNQLEMERKRGEELNKLRKASQAQCWWELPIEELELHQLEQLKASLDELKKNVTQQADRILIQTSNGNPPPQFFPTPTPTNPNQQGGVFVIDSKNMISHLPYNYGPYGSRGFF | 219 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 2713164 | 2714024 | - | Sed0009196.1 | Sed13g0413 | 733923 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g0413 | 219 | Coils | Coil | 96 | 116 | - | - | |
Sed13g0413 | 219 | PRINTS | MADS domain signature | 27 | 42 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed13g0413 | 219 | PRINTS | MADS domain signature | 42 | 63 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed13g0413 | 219 | PRINTS | MADS domain signature | 7 | 27 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed13g0413 | 219 | Coils | Coil | 138 | 165 | - | - | |
Sed13g0413 | 219 | Gene3D | - | 83 | 175 | - | - | |
Sed13g0413 | 219 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 15 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed13g0413 | 219 | ProSiteProfiles | MADS-box domain profile. | 5 | 65 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed13g0413 | 219 | Gene3D | - | 17 | 81 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed13g0413 | 219 | SMART | madsneu2 | 5 | 64 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed13g0413 | 219 | FunFam | Agamous-like MADS-box protein AGL62 | 17 | 83 | - | - | |
Sed13g0413 | 219 | SUPERFAMILY | SRF-like | 6 | 78 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed13g0413 | 219 | PANTHER | MADS BOX PROTEIN | 6 | 157 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed13g0413 | 219 | CDD | MADS_MEF2_like | 6 | 73 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2078 | Sed-Chr4:35083471 | Sed13g0413 | Sed-Chr13:2713164 | 1.10E-29 | dispersed | |
Sed08g2683 | Sed-Chr8:38899512 | Sed13g0413 | Sed-Chr13:2713164 | 1.10E-26 | dispersed | |
Sed09g0174 | Sed-Chr9:1412480 | Sed13g0413 | Sed-Chr13:2713164 | 3.00E-27 | dispersed | |
Sed10g0152 | Sed-Chr10:943992 | Sed13g0413 | Sed-Chr13:2713164 | 1.20E-35 | dispersed | |
Sed13g0413 | Sed-Chr13:2713164 | Sed14g1573 | Sed-Chr14:23831013 | 2.20E-36 | dispersed | |
Sed13g0413 | Sed-Chr13:2713164 | Sed07g1151 | Sed-Chr7:8633552 | 4.60E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40341 | PF00319 | SRF-TF | 2.50E-24 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g0413 | - | - | - | 0.0 |