Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0413 ATGAGAAAGAGCAGAGGCAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTCCAAGTCACCTTCTCGAAGCGTCGGTCGGGCCTCTTCAAAAAAGCTAGCGAGCTCTCCACGCTCTGCGGTGCAGAGATTGCCATCATCGTCTTTTCGCCAGGGAAGAAGGTGTTCTCCTTTGGCCACCCTAGTGTTGAGGCTCTCATTGACCGCTTTGTGACTCGAAACCCCCCACCGAGCTCCGGTACACTTCAACTAATCGAAGCTCACCGAAATGCCAATGTTCGAGAACTAAATTCGCAACTCACTCAAGTGTCAAACCAATTGGAGATGGAGCGAAAGCGCGGGGAAGAGTTGAACAAACTCCGAAAGGCAAGCCAGGCACAATGCTGGTGGGAACTTCCCATTGAAGAACTGGAATTGCATCAACTCGAACAACTTAAAGCATCTTTGGATGAACTAAAGAAGAATGTCACACAACAAGCTGATCGGATTTTGATTCAAACCTCGAACGGGAATCCGCCACCGCAGTTCTTCCCGACTCCAACGCCTACAAACCCGAACCAACAAGGCGGCGTTTTCGTCATCGATTCGAAGAACATGATCTCTCATCTTCCCTACAACTATGGCCCATATGGATCAAGAGGTTTCTTTTGA 660 49.24 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFSFGHPSVEALIDRFVTRNPPPSSGTLQLIEAHRNANVRELNSQLTQVSNQLEMERKRGEELNKLRKASQAQCWWELPIEELELHQLEQLKASLDELKKNVTQQADRILIQTSNGNPPPQFFPTPTPTNPNQQGGVFVIDSKNMISHLPYNYGPYGSRGFF 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2713164 2714024 - Sed0009196.1 Sed13g0413 733923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0413 219 Coils Coil 96 116 - -
Sed13g0413 219 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0413 219 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0413 219 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0413 219 Coils Coil 138 165 - -
Sed13g0413 219 Gene3D - 83 175 - -
Sed13g0413 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0413 219 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0413 219 Gene3D - 17 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0413 219 SMART madsneu2 5 64 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0413 219 FunFam Agamous-like MADS-box protein AGL62 17 83 - -
Sed13g0413 219 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0413 219 PANTHER MADS BOX PROTEIN 6 157 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed13g0413 219 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2078 Sed-Chr4:35083471 Sed13g0413 Sed-Chr13:2713164 1.10E-29 dispersed
Sed08g2683 Sed-Chr8:38899512 Sed13g0413 Sed-Chr13:2713164 1.10E-26 dispersed
Sed09g0174 Sed-Chr9:1412480 Sed13g0413 Sed-Chr13:2713164 3.00E-27 dispersed
Sed10g0152 Sed-Chr10:943992 Sed13g0413 Sed-Chr13:2713164 1.20E-35 dispersed
Sed13g0413 Sed-Chr13:2713164 Sed14g1573 Sed-Chr14:23831013 2.20E-36 dispersed
Sed13g0413 Sed-Chr13:2713164 Sed07g1151 Sed-Chr7:8633552 4.60E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40341 PF00319 SRF-TF 2.50E-24 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0413 - - - 0.0