Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0413 ATGAGAAAGAGCAGAGGCAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTCCAAGTCACCTTCTCGAAGCGTCGGTCGGGCCTCTTCAAAAAAGCTAGCGAGCTCTCCACGCTCTGCGGTGCAGAGATTGCCATCATCGTCTTTTCGCCAGGGAAGAAGGTGTTCTCCTTTGGCCACCCTAGTGTTGAGGCTCTCATTGACCGCTTTGTGACTCGAAACCCCCCACCGAGCTCCGGTACACTTCAACTAATCGAAGCTCACCGAAATGCCAATGTTCGAGAACTAAATTCGCAACTCACTCAAGTGTCAAACCAATTGGAGATGGAGCGAAAGCGCGGGGAAGAGTTGAACAAACTCCGAAAGGCAAGCCAGGCACAATGCTGGTGGGAACTTCCCATTGAAGAACTGGAATTGCATCAACTCGAACAACTTAAAGCATCTTTGGATGAACTAAAGAAGAATGTCACACAACAAGCTGATCGGATTTTGATTCAAACCTCGAACGGGAATCCGCCACCGCAGTTCTTCCCGACTCCAACGCCTACAAACCCGAACCAACAAGGCGGCGTTTTCGTCATCGATTCGAAGAACATGATCTCTCATCTTCCCTACAACTATGGCCCATATGGATCAAGAGGTTTCTTTTGA 660 49.24 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFSFGHPSVEALIDRFVTRNPPPSSGTLQLIEAHRNANVRELNSQLTQVSNQLEMERKRGEELNKLRKASQAQCWWELPIEELELHQLEQLKASLDELKKNVTQQADRILIQTSNGNPPPQFFPTPTPTNPNQQGGVFVIDSKNMISHLPYNYGPYGSRGFF 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2713164 2714024 - Sed0009196.1 Sed13g0413 733923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0413 219 Coils Coil 96 116 - -
Sed13g0413 219 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0413 219 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0413 219 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0413 219 Coils Coil 138 165 - -
Sed13g0413 219 Gene3D - 83 175 - -
Sed13g0413 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0413 219 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0413 219 Gene3D - 17 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0413 219 SMART madsneu2 5 64 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0413 219 FunFam Agamous-like MADS-box protein AGL62 17 83 - -
Sed13g0413 219 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g0413 219 PANTHER MADS BOX PROTEIN 6 157 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed13g0413 219 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0413 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2078 Sed-Chr4:35083471 Sed13g0413 Sed-Chr13:2713164 1.10E-29 dispersed
Sed08g2683 Sed-Chr8:38899512 Sed13g0413 Sed-Chr13:2713164 1.10E-26 dispersed
Sed09g0174 Sed-Chr9:1412480 Sed13g0413 Sed-Chr13:2713164 3.00E-27 dispersed
Sed10g0152 Sed-Chr10:943992 Sed13g0413 Sed-Chr13:2713164 1.20E-35 dispersed
Sed13g0413 Sed-Chr13:2713164 Sed14g1573 Sed-Chr14:23831013 2.20E-36 dispersed
Sed13g0413 Sed-Chr13:2713164 Sed07g1151 Sed-Chr7:8633552 4.60E-103 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g1935 . 1 315 Type I MADS-box Gene Family AT2G03060 52.2 4.7e-87 319.3
Sed13g0413 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 7.0e-37 152.1
Sed13g0413 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 4.8e-50 196.1
Sed07g1151 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.3e-49 192.6
Sed13g0960 . 3 213 Type I MADS-box Gene Family AT1G77950 52.7 3.0e-53 206.5
Sed04g0389 . 1 162 Type I MADS-box Gene Family AT5G48670 65.4 1.2e-54 211.5
Sed08g1920 . 1 157 Type I MADS-box Gene Family AT5G48670 61.1 5.6e-49 192.6
Sed07g1935 . 1 315 Type I MADS-box Gene Family AT2G03060 52.2 4.7e-87 319.3
Sed13g0413 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 7.0e-37 152.1
Sed13g0413 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 4.8e-50 196.1
Sed07g1151 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.3e-49 192.6
Sed13g0960 . 3 213 Type I MADS-box Gene Family AT1G77950 52.7 3.0e-53 206.5
Sed04g0389 . 1 162 Type I MADS-box Gene Family AT5G48670 65.4 1.2e-54 211.5
Sed08g1920 . 1 157 Type I MADS-box Gene Family AT5G48670 61.1 5.6e-49 192.6
Sed07g1935 . 1 315 Type I MADS-box Gene Family AT2G03060 52.2 4.7e-87 319.3
Sed13g0413 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 4.8e-50 196.1
Sed07g1151 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.3e-49 192.6
Sed04g0389 . 1 162 Type I MADS-box Gene Family AT5G48670 65.4 1.2e-54 211.5
Sed08g1920 . 1 157 Type I MADS-box Gene Family AT5G48670 61.1 5.6e-49 192.6
Sed13g0413 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 7.0e-37 152.1
Sed13g0960 . 3 213 Type I MADS-box Gene Family AT1G77950 52.7 3.0e-53 206.5
Sed07g1935 . 1 315 Type I MADS-box Gene Family AT2G03060 52.2 4.7e-87 319.3
Sed13g0413 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 4.8e-50 196.1
Sed07g1151 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.3e-49 192.6
Sed04g0389 . 1 162 Type I MADS-box Gene Family AT5G48670 65.4 1.2e-54 211.5
Sed08g1920 . 1 157 Type I MADS-box Gene Family AT5G48670 61.1 5.6e-49 192.6
Sed13g0413 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 7.0e-37 152.1
Sed13g0960 . 3 213 Type I MADS-box Gene Family AT1G77950 52.7 3.0e-53 206.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003994 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 2 2 1 7 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40341 PF00319 SRF-TF 2.50E-24 No_clan Sed TF