Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0429 ATGGGTGCTCCGAAGCAGAAATGGACTAACCAAGAAGAATCAGCCTTGAAGGCTGGAGTTGTTAAGCATGGAGCTGGAAAGTGGAGAACAATACTTAAGGATCCTGAATTCAGCAACGTACTATATCTTCGTTCAAATGTTGATCTCAAGGATAAGTGGAGAAACATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTGGCTCATAAGAGACCACCTGCTTCGAAAAAAGATGAGAGTATTGCAGCTCAAGGCGTTGCTGTCCAAAGTGAAGATGAATCACCAGAAGTTAAGTCTGTTTCCCTTTCCATGGACAACAAGCAGATAGCTGGTCCCAAGCGATCAAATGTAAGAAAAGAAAAAGAGGAAGAGGAAGAAGATGAAGAAGAGGAAGAAGATGAAGAAGAAGAAGAAAAAGAAGTAGAAAAAGAGGTAGAAAAAGAAGTAGAAAGAATAGAAAAAGATGCAAGATATGATAGTCACAGGTTAGATAATCTTATATTTGAGGCCATTTCTACATTGAAGGAACGTAGTGGCTCTATTAGGAATAGCATTGCTTCATATATAGAGGATCAATACTGGGCTCCTCCAGACCTCAAGAGGCTGTTATCATCAAAGCTGAAGTTCTTAACAGCTAGTGGTAAACTGATCAAGGTTAAACGAAGATATAGGCTTCCTCCAACGGTGTCTTCATCAGAGAGGAAGGGCTCTGTGTTATTGTTGGACGACCGGCTCAAGGATTCTATGAGAGCTGACAAGGATGAAATCTGCACTCTCGCAAAAGCTCAAATTGATCTCGAGTTAGCCAAGATGAGGACCATGACTTCGCAAGAGGCAGCTGGTGTTGCTGCTCAGGCAGTTGCAGAAGCCGAAGCAGCGATAGCAGAAGCTGAAGAGGCAGCAAGGGAAGCCGAGTTAGCTGAAGCTGATGCCGACGCAGCACAGTCATTTGCTGAGGCCGCAATGAAGACGCTAAAAGGGAGAAATCTCCCAAAAATGATGATTAGGGTTTGA 1026 43.96 MGAPKQKWTNQEESALKAGVVKHGAGKWRTILKDPEFSNVLYLRSNVDLKDKWRNMSVMANGWGSREKARLAHKRPPASKKDESIAAQGVAVQSEDESPEVKSVSLSMDNKQIAGPKRSNVRKEKEEEEEDEEEEEDEEEEEKEVEKEVEKEVERIEKDARYDSHRLDNLIFEAISTLKERSGSIRNSIASYIEDQYWAPPDLKRLLSSKLKFLTASGKLIKVKRRYRLPPTVSSSERKGSVLLLDDRLKDSMRADKDEICTLAKAQIDLELAKMRTMTSQEAAGVAAQAVAEAEAAIAEAEEAAREAELAEADADAAQSFAEAAMKTLKGRNLPKMMIRV 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2825700 2836035 + Sed0010609.1 Sed13g0429 733939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0429 341 MobiDBLite consensus disorder prediction 60 153 - -
Sed13g0429 341 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Sed13g0429 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Sed13g0429 341 Gene3D - 162 240 IPR036388 -
Sed13g0429 341 SMART sant 4 59 IPR001005 -
Sed13g0429 341 FunFam Telomere repeat-binding factor 1 2 58 - -
Sed13g0429 341 MobiDBLite consensus disorder prediction 67 81 - -
Sed13g0429 341 MobiDBLite consensus disorder prediction 98 114 - -
Sed13g0429 341 CDD SANT_TRF 6 56 - -
Sed13g0429 341 CDD H15 169 240 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed13g0429 341 Pfam linker histone H1 and H5 family 167 224 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed13g0429 341 Coils Coil 284 318 - -
Sed13g0429 341 Gene3D - 2 59 - -
Sed13g0429 341 SMART h15plus2 162 226 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed13g0429 341 PANTHER SINGLE MYB HISTONE 4 1 335 IPR044597 GO:0003691(InterPro)
Sed13g0429 341 FunFam Telomere repeat-binding factor 1 8 86 - -
Sed13g0429 341 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 163 231 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed13g0429 341 MobiDBLite consensus disorder prediction 126 147 - -
Sed13g0429 341 SUPERFAMILY Homeodomain-like 2 74 IPR009057 -
Sed13g0429 341 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Sed13g0429 341 SUPERFAMILY Winged helix DNA-binding domain 164 238 IPR036390 -
Sed13g0429 341 Coils Coil 118 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1257 Sed-Chr7:9409707 Sed13g0429 Sed-Chr13:2825700 2.20E-112 dispersed
Sed13g0429 Sed-Chr13:2825700 Sed14g0928 Sed-Chr14:18295865 1.70E-51 dispersed
Sed13g0429 Sed-Chr13:2825700 Sed07g1256 Sed-Chr7:9409707 1.50E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40342 PF00538 Linker_histone 3.30E-09 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0429 K09422 - csv:101218411 398.282