Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0429 ATGGGTGCTCCGAAGCAGAAATGGACTAACCAAGAAGAATCAGCCTTGAAGGCTGGAGTTGTTAAGCATGGAGCTGGAAAGTGGAGAACAATACTTAAGGATCCTGAATTCAGCAACGTACTATATCTTCGTTCAAATGTTGATCTCAAGGATAAGTGGAGAAACATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTGGCTCATAAGAGACCACCTGCTTCGAAAAAAGATGAGAGTATTGCAGCTCAAGGCGTTGCTGTCCAAAGTGAAGATGAATCACCAGAAGTTAAGTCTGTTTCCCTTTCCATGGACAACAAGCAGATAGCTGGTCCCAAGCGATCAAATGTAAGAAAAGAAAAAGAGGAAGAGGAAGAAGATGAAGAAGAGGAAGAAGATGAAGAAGAAGAAGAAAAAGAAGTAGAAAAAGAGGTAGAAAAAGAAGTAGAAAGAATAGAAAAAGATGCAAGATATGATAGTCACAGGTTAGATAATCTTATATTTGAGGCCATTTCTACATTGAAGGAACGTAGTGGCTCTATTAGGAATAGCATTGCTTCATATATAGAGGATCAATACTGGGCTCCTCCAGACCTCAAGAGGCTGTTATCATCAAAGCTGAAGTTCTTAACAGCTAGTGGTAAACTGATCAAGGTTAAACGAAGATATAGGCTTCCTCCAACGGTGTCTTCATCAGAGAGGAAGGGCTCTGTGTTATTGTTGGACGACCGGCTCAAGGATTCTATGAGAGCTGACAAGGATGAAATCTGCACTCTCGCAAAAGCTCAAATTGATCTCGAGTTAGCCAAGATGAGGACCATGACTTCGCAAGAGGCAGCTGGTGTTGCTGCTCAGGCAGTTGCAGAAGCCGAAGCAGCGATAGCAGAAGCTGAAGAGGCAGCAAGGGAAGCCGAGTTAGCTGAAGCTGATGCCGACGCAGCACAGTCATTTGCTGAGGCCGCAATGAAGACGCTAAAAGGGAGAAATCTCCCAAAAATGATGATTAGGGTTTGA 1026 43.96 MGAPKQKWTNQEESALKAGVVKHGAGKWRTILKDPEFSNVLYLRSNVDLKDKWRNMSVMANGWGSREKARLAHKRPPASKKDESIAAQGVAVQSEDESPEVKSVSLSMDNKQIAGPKRSNVRKEKEEEEEDEEEEEDEEEEEKEVEKEVEKEVERIEKDARYDSHRLDNLIFEAISTLKERSGSIRNSIASYIEDQYWAPPDLKRLLSSKLKFLTASGKLIKVKRRYRLPPTVSSSERKGSVLLLDDRLKDSMRADKDEICTLAKAQIDLELAKMRTMTSQEAAGVAAQAVAEAEAAIAEAEEAAREAELAEADADAAQSFAEAAMKTLKGRNLPKMMIRV 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2825700 2836035 + Sed0010609.1 Sed13g0429 733939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0429 341 MobiDBLite consensus disorder prediction 60 153 - -
Sed13g0429 341 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Sed13g0429 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Sed13g0429 341 Gene3D - 162 240 IPR036388 -
Sed13g0429 341 SMART sant 4 59 IPR001005 -
Sed13g0429 341 FunFam Telomere repeat-binding factor 1 2 58 - -
Sed13g0429 341 MobiDBLite consensus disorder prediction 67 81 - -
Sed13g0429 341 MobiDBLite consensus disorder prediction 98 114 - -
Sed13g0429 341 CDD SANT_TRF 6 56 - -
Sed13g0429 341 CDD H15 169 240 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed13g0429 341 Pfam linker histone H1 and H5 family 167 224 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed13g0429 341 Coils Coil 284 318 - -
Sed13g0429 341 Gene3D - 2 59 - -
Sed13g0429 341 SMART h15plus2 162 226 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed13g0429 341 PANTHER SINGLE MYB HISTONE 4 1 335 IPR044597 GO:0003691(InterPro)
Sed13g0429 341 FunFam Telomere repeat-binding factor 1 8 86 - -
Sed13g0429 341 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 163 231 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed13g0429 341 MobiDBLite consensus disorder prediction 126 147 - -
Sed13g0429 341 SUPERFAMILY Homeodomain-like 2 74 IPR009057 -
Sed13g0429 341 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Sed13g0429 341 SUPERFAMILY Winged helix DNA-binding domain 164 238 IPR036390 -
Sed13g0429 341 Coils Coil 118 159 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0429 K09422 - - csv:101218411 398.282
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1257 Sed-Chr7:9409707 Sed13g0429 Sed-Chr13:2825700 2.20E-112 dispersed
Sed13g0429 Sed-Chr13:2825700 Sed14g0928 Sed-Chr14:18295865 1.70E-51 dispersed
Sed13g0429 Sed-Chr13:2825700 Sed07g1256 Sed-Chr7:9409707 1.50E-113 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed13g0429 . 1 340 Single Myb Histone (SMH) Gene Family AT1G49950 54.9 6.6e-68 255.4
Sed07g1256 . 1 329 Single Myb Histone (SMH) Gene Family AT1G49950 54.9 7.3e-67 251.9
Sed07g1257 . 1 329 Single Myb Histone (SMH) Gene Family AT1G49950 54.9 7.3e-67 251.9
Sed10g0741 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 52.8 1.0e-60 231.5
Sed10g0741 . 1 249 Single Myb Histone (SMH) Gene Family AT5G67580 53.1 1.8e-65 247.3
Sed10g0741 . 1 249 Single Myb Histone (SMH) Gene Family AT3G49850 50.2 2.6e-56 216.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40342 PF00538 Linker_histone 3.30E-09 CL0123 Sed TF