Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0445 ATGGAACATATAGGAGCCATTTCAGAAAGGGAATGGATCTCTTTGAGTGGAACATATACAGCTGAGGAATCTGATTTTATGGCTAATTTTCTCAATAATTATTGTCTTCCAAATGAGCTAATTAACTCAGATTTGAGCTTAGAAATCTCATCTAATTATTGGGTTGCCAATGAACAAACATCATTGTCCATCGCAGCCATGGATGAACCTTCTTATTATTCTTCAGATGCTTCTGATTCTTCCAATATGTATGGCCACCCTCTTTGGTTCCCCAATGGTGCCTCTTTCTCCTACGAGGGTGTCGGGAATCCCGACAACGGTTCGAGTCGAAAAACAAACCAATGCAGGCTACAACATTCCCCTACTGACCCTGCTGCTTGTGTCAATGAGAGGAGTTTACAGCTTAAGAGGAAAGCAGAGGAGGACGAAGCTACGAGAGACGAGAAAGTTGCGCTGATGTCAGTTGACGACAAGTCAAAGAAGCGATCCCGGAGTTTACCTGATGTTGAAAAGTCGAAGAGGAGCGGGAGGGCACCGAAAATCCCAAAGCTTTCTTCGGCTAGCTGCAACCAAGAGGATCACATTGTTAGTCCAAATGGGCAGTGCACAAGCAGCTTCAGCTCTGAGGATGAGTGTAATGAAGTTCAAGAAATCAATGGTGGAATTACTTCAAGTGAAAACTCAAAAGGAAAGTCAAGAGCCAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCTAGGAAAAGAAGAGAAAGGATCAATGAGAGGTTGAGAATCTTACAAAGCCTCGTCCCGAACGGCACAAAGGTTGATATCAGTACAATGCTTGAAGAAGCTGTTGAATATGTGAAGTTTTTGCAGCTTCAAATCAAGTTGTTGAGCTCTGATGATCTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAATTTGAAGCTCATGAAGCATGACAATGCATCACAATAG 981 43.02 MEHIGAISEREWISLSGTYTAEESDFMANFLNNYCLPNELINSDLSLEISSNYWVANEQTSLSIAAMDEPSYYSSDASDSSNMYGHPLWFPNGASFSYEGVGNPDNGSSRKTNQCRLQHSPTDPAACVNERSLQLKRKAEEDEATRDEKVALMSVDDKSKKRSRSLPDVEKSKRSGRAPKIPKLSSASCNQEDHIVSPNGQCTSSFSSEDECNEVQEINGGITSSENSKGKSRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKHDNASQ 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3024975 3026884 - Sed0003665.1 Sed13g0445 733955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0445 326 SMART finulus 244 293 IPR011598 GO:0046983(InterPro)
Sed13g0445 326 MobiDBLite consensus disorder prediction 133 177 - -
Sed13g0445 326 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 94 310 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed13g0445 326 FunFam Basic helix-loop-helix transcription factor 239 296 - -
Sed13g0445 326 MobiDBLite consensus disorder prediction 100 249 - -
Sed13g0445 326 MobiDBLite consensus disorder prediction 184 242 - -
Sed13g0445 326 Pfam Helix-loop-helix DNA-binding domain 248 288 IPR011598 GO:0046983(InterPro)
Sed13g0445 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 238 287 IPR011598 GO:0046983(InterPro)
Sed13g0445 326 CDD bHLH_AtIND_like 239 301 - -
Sed13g0445 326 MobiDBLite consensus disorder prediction 100 120 - -
Sed13g0445 326 Gene3D - 240 296 IPR036638 GO:0046983(InterPro)
Sed13g0445 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 304 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0445 Sed-Chr13:3024975 Sed08g0596 Sed-Chr8:4098574 1.60E-14 dispersed
Sed13g0445 Sed-Chr13:3024975 Sed13g1799 Sed-Chr13:23005146 7.70E-38 wgd
Sed13g0445 Sed-Chr13:3024975 Sed05g2626 Sed-Chr5:37878677 1.70E-45 wgd
Sed13g0445 Sed-Chr13:3024975 Sed07g1264 Sed-Chr7:9507937 2.10E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40343 PF00010 HLH 2.10E-09 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0445 - - - 0.0