Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g0468 | ATGGGGAGCGTTGAATCCGACAGAACTGTAACGGGGTTCGCCGCTAAGGATCCCTCCGGAATTCTCTCTCCATATAATTACACTCTCAGAAATACAGGCCCAGAAGATGTGTACATAAAGGTAATTTGCTGTGGGGTATGCCACTCTGATCTTCACCAAATCAAAAACGACCTGGGCATGTCGAATTACCCCATGGTTCCAGGGCACGAGGTGGTGGGAGAAGTGGTGGAAGTTGGACCGGAAGTTGGTCGGTTCAGACCGGGGGATTTGGTCGGAGTGGGTTGTATTGTGGGGTCGTGTTCGACATGTCGTCCTTGCGATTCCGACAAGGAGCAGTACTGTAACAGGAGAATTTGGAGTTATAATGATGTTTATCACGACGGCCGCCCCACCCAAGGCGGCTTCGCCTCCGCCATGGTCGTTCACCATAAATTCGTGGTGAAAATCCCCGAAGGGATGTCGCCCGAGCAGGCGGCGCCGATTCTATGCGCGGGCGTAACAGTGTACAGCCCGCTCAGCCACTTCGGGCTGAAACAGAGCGGACTCAAAGGCGGAATCTTGGGGCTCGGCGGTGTCGGCCACATGGGCGTGAAAGTGGCCAAGGCGTTGGGCCACCACGTGACGGTGATAAGCTCCTCGGATAAGAAGAGGGACGAAGCTCTCGAACACCTCGGCGCTGACGAGTACTTGGTCAGCTCCGACAAGGCTCAAATGGATCGAGCCGTCGACTCGCTCGATTACATCATCGACACCGTCCCGGTGTTTCACCCTCTCGAGCCATATCTCTCTCTGCTCAAACTCGATGGCAAATTGATCTTGATGGGTGTTATTAATACCCCGTTGCAGTTCGTTTCGCCTCTCCTTATGCTCGGGAGGAAGACGATTACCGGAAGCTTCATCGGAAGCATGTCGGAGACGCAAGAAGTGTTGGATTTCTTCAAAGAAAAGAAATTAACCTCCATGGTTGAAGTCGTTAAGCTTGATTATATAAACAAGGCTTTGGACCGGTTGGAGAAGAATGACGTCAGATACAGGTTCGTCGTTGATGTCGCCGGAAGTAAGTTGCCGGAATTAAGTTGA | 1080 | 52.41 | MGSVESDRTVTGFAAKDPSGILSPYNYTLRNTGPEDVYIKVICCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGPEVGRFRPGDLVGVGCIVGSCSTCRPCDSDKEQYCNRRIWSYNDVYHDGRPTQGGFASAMVVHHKFVVKIPEGMSPEQAAPILCAGVTVYSPLSHFGLKQSGLKGGILGLGGVGHMGVKVAKALGHHVTVISSSDKKRDEALEHLGADEYLVSSDKAQMDRAVDSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVSPLLMLGRKTITGSFIGSMSETQEVLDFFKEKKLTSMVEVVKLDYINKALDRLEKNDVRYRFVVDVAGSKLPELS | 359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 3192509 | 3197031 | + | Sed0016864.1 | Sed13g0468 | 733978 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g0468 | 359 | FunFam | probable cinnamyl alcohol dehydrogenase | 13 | 170 | - | - | |
Sed13g0468 | 359 | Gene3D | - | 13 | 350 | - | - | |
Sed13g0468 | 359 | Pfam | Zinc-binding dehydrogenase | 191 | 314 | IPR013149 | - | |
Sed13g0468 | 359 | PANTHER | ALDEHYDE REDUCTASE | 9 | 352 | IPR047109 | GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER) | |
Sed13g0468 | 359 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 153 | 318 | IPR036291 | - | |
Sed13g0468 | 359 | FunFam | Cinnamyl alcohol dehydrogenase | 164 | 320 | - | - | |
Sed13g0468 | 359 | Gene3D | - | 164 | 320 | - | - | |
Sed13g0468 | 359 | FunFam | Putative cinnamyl alcohol dehydrogenase 6 | 321 | 350 | - | - | |
Sed13g0468 | 359 | Pfam | Alcohol dehydrogenase GroES-like domain | 33 | 151 | IPR013154 | - | |
Sed13g0468 | 359 | CDD | CAD1 | 11 | 349 | IPR047109 | GO:0016616(InterPro) | |
Sed13g0468 | 359 | SMART | PKS_ER_names_mod | 20 | 348 | IPR020843 | GO:0016491(InterPro) | |
Sed13g0468 | 359 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 68 | 82 | IPR002328 | GO:0008270(InterPro)|GO:0016491(InterPro) | |
Sed13g0468 | 359 | SUPERFAMILY | GroES-like | 17 | 181 | IPR011032 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g1292 | Sed-Chr7:9685535 | Sed13g0468 | Sed-Chr13:3192509 | 1.10E-189 | dispersed | |
Sed10g2013 | Sed-Chr10:36715065 | Sed13g0468 | Sed-Chr13:3192509 | 1.10E-53 | dispersed | |
Sed13g0468 | Sed-Chr13:3192509 | Sed13g2160 | Sed-Chr13:26172324 | 1.60E-92 | dispersed | |
Sed13g0468 | Sed-Chr13:3192509 | Sed05g2604 | Sed-Chr5:37710278 | 6.70E-168 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g0468 | K00083 | - | csv:101222395 | 609.757 |