Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0468 ATGGGGAGCGTTGAATCCGACAGAACTGTAACGGGGTTCGCCGCTAAGGATCCCTCCGGAATTCTCTCTCCATATAATTACACTCTCAGAAATACAGGCCCAGAAGATGTGTACATAAAGGTAATTTGCTGTGGGGTATGCCACTCTGATCTTCACCAAATCAAAAACGACCTGGGCATGTCGAATTACCCCATGGTTCCAGGGCACGAGGTGGTGGGAGAAGTGGTGGAAGTTGGACCGGAAGTTGGTCGGTTCAGACCGGGGGATTTGGTCGGAGTGGGTTGTATTGTGGGGTCGTGTTCGACATGTCGTCCTTGCGATTCCGACAAGGAGCAGTACTGTAACAGGAGAATTTGGAGTTATAATGATGTTTATCACGACGGCCGCCCCACCCAAGGCGGCTTCGCCTCCGCCATGGTCGTTCACCATAAATTCGTGGTGAAAATCCCCGAAGGGATGTCGCCCGAGCAGGCGGCGCCGATTCTATGCGCGGGCGTAACAGTGTACAGCCCGCTCAGCCACTTCGGGCTGAAACAGAGCGGACTCAAAGGCGGAATCTTGGGGCTCGGCGGTGTCGGCCACATGGGCGTGAAAGTGGCCAAGGCGTTGGGCCACCACGTGACGGTGATAAGCTCCTCGGATAAGAAGAGGGACGAAGCTCTCGAACACCTCGGCGCTGACGAGTACTTGGTCAGCTCCGACAAGGCTCAAATGGATCGAGCCGTCGACTCGCTCGATTACATCATCGACACCGTCCCGGTGTTTCACCCTCTCGAGCCATATCTCTCTCTGCTCAAACTCGATGGCAAATTGATCTTGATGGGTGTTATTAATACCCCGTTGCAGTTCGTTTCGCCTCTCCTTATGCTCGGGAGGAAGACGATTACCGGAAGCTTCATCGGAAGCATGTCGGAGACGCAAGAAGTGTTGGATTTCTTCAAAGAAAAGAAATTAACCTCCATGGTTGAAGTCGTTAAGCTTGATTATATAAACAAGGCTTTGGACCGGTTGGAGAAGAATGACGTCAGATACAGGTTCGTCGTTGATGTCGCCGGAAGTAAGTTGCCGGAATTAAGTTGA 1080 52.41 MGSVESDRTVTGFAAKDPSGILSPYNYTLRNTGPEDVYIKVICCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGPEVGRFRPGDLVGVGCIVGSCSTCRPCDSDKEQYCNRRIWSYNDVYHDGRPTQGGFASAMVVHHKFVVKIPEGMSPEQAAPILCAGVTVYSPLSHFGLKQSGLKGGILGLGGVGHMGVKVAKALGHHVTVISSSDKKRDEALEHLGADEYLVSSDKAQMDRAVDSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVSPLLMLGRKTITGSFIGSMSETQEVLDFFKEKKLTSMVEVVKLDYINKALDRLEKNDVRYRFVVDVAGSKLPELS 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3192509 3197031 + Sed0016864.1 Sed13g0468 733978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0468 359 FunFam probable cinnamyl alcohol dehydrogenase 13 170 - -
Sed13g0468 359 Gene3D - 13 350 - -
Sed13g0468 359 Pfam Zinc-binding dehydrogenase 191 314 IPR013149 -
Sed13g0468 359 PANTHER ALDEHYDE REDUCTASE 9 352 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
Sed13g0468 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 153 318 IPR036291 -
Sed13g0468 359 FunFam Cinnamyl alcohol dehydrogenase 164 320 - -
Sed13g0468 359 Gene3D - 164 320 - -
Sed13g0468 359 FunFam Putative cinnamyl alcohol dehydrogenase 6 321 350 - -
Sed13g0468 359 Pfam Alcohol dehydrogenase GroES-like domain 33 151 IPR013154 -
Sed13g0468 359 CDD CAD1 11 349 IPR047109 GO:0016616(InterPro)
Sed13g0468 359 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491(InterPro)
Sed13g0468 359 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Sed13g0468 359 SUPERFAMILY GroES-like 17 181 IPR011032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1292 Sed-Chr7:9685535 Sed13g0468 Sed-Chr13:3192509 1.10E-189 dispersed
Sed10g2013 Sed-Chr10:36715065 Sed13g0468 Sed-Chr13:3192509 1.10E-53 dispersed
Sed13g0468 Sed-Chr13:3192509 Sed13g2160 Sed-Chr13:26172324 1.60E-92 dispersed
Sed13g0468 Sed-Chr13:3192509 Sed05g2604 Sed-Chr5:37710278 6.70E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0468 K00083 - csv:101222395 609.757