Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0474 ATGAACTTCAAACCTACAAATCTTACTCTGTTTTTGTCCTCTGTTTTCATTTTTCGTCATCTTTTTCTGCAATCTTTGGCTCTCAACAGCGATGGCACCCTTTTGATTTCTCTCAAGAGTACCATTCTCAGAGATCCGTTGTCGGTTTTTGCTGATTGGGATTTCAACGATGCAACTCCATGTTCTTGGCGTGGAGTTATCTGCACTGATTTACAGAGCTCCGGCGGCGGCGGCGGCTGGCCGGAATTTCTCAGAGTCACGGCTCTGTCTCTCCCCGGCAGCCAGCTTCTGGGTTCGATCCCCGACGAGCTCGGAAGGATCGAACACCTTCGTCTTCTCGATCTTTCCGGTAATTTCTTTAATGGGTCTGTGCCCTTTTCGATTTTTAACGCTTCAGAGCTTCAGATTCTTTCTCTGTCGAACAATGTCATCTCCGGCGAGTTGCCGGCGGAATTTGGGGGCTTGACGAATCTTCAGGTTTTGAATCTGTCTGATAATGCATTGGCCGGGAAATTGCCGACGAATTTTAGTGGTTTGATGAATCTCACTGTAATTTCTCTTAGAAGTAATTACTTCGCCGGAGAGATTCCGGCGAGTTTCAGTTCCGTTGAGGTTTTGGATCTGTCGTCTAATTTGTTCAATGGGTCTTTGCCGGCGGATTTTGGAGGTGAAAAACTTCGATATTTGAACTTTTCGTACAATAAGATTTCAAGTTCGATTCCGGCGGAGTTTGCCAAGAAGATTCAGGCGAATGCAACGGTGGATCTGTCGTTCAACAATCTCACCGGAGCAATTCCTCTGTCGATTACTCTGCTCAGCCAAAAAACAGAGTATTTCGCAGGAAATGAAAATCTCTGCGGGAAACCATTGAAGAATCTCTGTTCGATTCCTTCTTCACTTACAAATCCCCCAAACGTTACTGAAACTTCATCTCCGGCAATCGCTGCCATACCCAAAATCATCGGCTCTGTGCCGGCGACGGAGTCGCCGGGCGGTCCACACGCAACACAACCGCCGCCGCCGCAATCCGCCATGAAACCCATCACAATAGTCGCCATCGCCGTCGGCGACCTCGCCGGAGTCGCGATTCTCGGCGTCGTGATCCTCTACGTCTACTATCACCGGAAACGAACACAACCCATTTCCAAAATCCCTAAATCAGAAAACCCCCCTCAATCGAATCAGAAAAAGCCCTCGTCGGCGATGTTCTGTTTGGCGAACAACGGCGAAGAAACATCGGAGGCGACGGCGAGCTCCTCCGAAGGCGAAGAACCGAGAGACAGATCCGGCGGTGAAAACAGAGGAAGTAAGAAAAACGCCGGCGGCGTTCTGGTGACGGTGGACGGAGAAACAGAGCTCGATTTGGAGACTCTGTTGAAAGCGTCGGCGTATATCCTCGGAGCTAGCGGCGGGAGCATTGTGTACAAGGCGGTGCTGGAGGACGGCACGGCGTTCGCCGTCAGAAGGATCGGCGACGGCGGCGTTGAGAGATTGAGGGATTTTGAAGCTCAAATCAGAGCCATTGCGAAGCTTCGGCATCAGAATTTGGTGAAAATTCGAGGGTTCAGTTGGGGAGAAGACGAAAAGCTCATCATCTGCGATTATGTCTCCAATGGCTGCCTTGCAACCGCCATTCACAGAAAACCGAGTTCATCGTCTTCTTCACAAAGCCATCTATCCTTGGAAACCAGACTGAAAATCGCAAGAGGAATCGCAAGAGGACTCACCTTCATCCACGACAAGAAGCACATCCATGGAAACCTCAAGCCTTCCAACATCCTCCTCACCGCCGAAATGGAGCCGGTCATCACCGATCTCGGCCTCCACAGGCTCCTCTCCGCCAGAACCGCCCGGAACTTCGGCAGCCACAGATCCACGCCGAATCGCGAGCCGCACGACGGCGGCGGCGGAGGAAGCCCGGCCGCGAGCCTCGGATCGGCGTACCAGGCGCCGGAATCGCTGAGGAACCTGAAACCGAGCCCGAAGTGGGACGTGTACTCGTTCGGAGTGATATTGCTGGAGATTCTGAGCGGGAGGATCGTGACGGAGAAGGAGGTGAATCAGTGGAACGGCGGCGAAGAGGAGGGGCGGATGAGGAAGATGATTGATTTGGCGATTCGAGGGGAAGTGGAAGGGAAAGAGGCGGCGGCGATGGGGGTTTTGAGATTAGGGTTTAGTTGTGTTTCTTTTGGGCCTCAAAAGAGGCCCAATATGAAAGAGGCATTGCAATTGCTTAACAAAATTTCTTCCTCCATTTCTTCTTCTAATTAA 2271 51.52 MNFKPTNLTLFLSSVFIFRHLFLQSLALNSDGTLLISLKSTILRDPLSVFADWDFNDATPCSWRGVICTDLQSSGGGGGWPEFLRVTALSLPGSQLLGSIPDELGRIEHLRLLDLSGNFFNGSVPFSIFNASELQILSLSNNVISGELPAEFGGLTNLQVLNLSDNALAGKLPTNFSGLMNLTVISLRSNYFAGEIPASFSSVEVLDLSSNLFNGSLPADFGGEKLRYLNFSYNKISSSIPAEFAKKIQANATVDLSFNNLTGAIPLSITLLSQKTEYFAGNENLCGKPLKNLCSIPSSLTNPPNVTETSSPAIAAIPKIIGSVPATESPGGPHATQPPPPQSAMKPITIVAIAVGDLAGVAILGVVILYVYYHRKRTQPISKIPKSENPPQSNQKKPSSAMFCLANNGEETSEATASSSEGEEPRDRSGGENRGSKKNAGGVLVTVDGETELDLETLLKASAYILGASGGSIVYKAVLEDGTAFAVRRIGDGGVERLRDFEAQIRAIAKLRHQNLVKIRGFSWGEDEKLIICDYVSNGCLATAIHRKPSSSSSSQSHLSLETRLKIARGIARGLTFIHDKKHIHGNLKPSNILLTAEMEPVITDLGLHRLLSARTARNFGSHRSTPNREPHDGGGGGSPAASLGSAYQAPESLRNLKPSPKWDVYSFGVILLEILSGRIVTEKEVNQWNGGEEEGRMRKMIDLAIRGEVEGKEAAAMGVLRLGFSCVSFGPQKRPNMKEALQLLNKISSSISSSN 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3219977 3225456 + Sed0026297.1 Sed13g0474 733984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0474 756 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 28 195 - -
Sed13g0474 756 Gene3D Phosphorylase Kinase; domain 1 433 535 - -
Sed13g0474 756 Gene3D Ribonuclease Inhibitor 201 296 IPR032675 -
Sed13g0474 756 Gene3D Ribonuclease Inhibitor 28 200 IPR032675 -
Sed13g0474 756 MobiDBLite consensus disorder prediction 420 434 - -
Sed13g0474 756 SUPERFAMILY L domain-like 29 291 - -
Sed13g0474 756 Pfam Protein kinase domain 466 743 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0474 756 ProSiteProfiles Protein kinase domain profile. 460 752 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0474 756 Pfam Leucine rich repeat 109 168 IPR001611 GO:0005515(InterPro)
Sed13g0474 756 PANTHER OS05G0588300 PROTEIN 154 751 IPR050994 -
Sed13g0474 756 FunFam Leucine-rich repeat receptor-like protein kinase 202 296 - -
Sed13g0474 756 MobiDBLite consensus disorder prediction 618 647 - -
Sed13g0474 756 MobiDBLite consensus disorder prediction 410 441 - -
Sed13g0474 756 Pfam Leucine rich repeat N-terminal domain 28 69 IPR013210 -
Sed13g0474 756 Gene3D Transferase(Phosphotransferase) domain 1 536 755 - -
Sed13g0474 756 Pfam Leucine Rich Repeat 203 222 IPR001611 GO:0005515(InterPro)
Sed13g0474 756 Pfam Leucine Rich Repeat 225 245 IPR001611 GO:0005515(InterPro)
Sed13g0474 756 Pfam Leucine Rich Repeat 181 202 IPR001611 GO:0005515(InterPro)
Sed13g0474 756 SUPERFAMILY Protein kinase-like (PK-like) 465 748 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0408 Sed-Chr1:3091372 Sed13g0474 Sed-Chr13:3219977 4.80E-131 dispersed
Sed11g1647 Sed-Chr11:31758718 Sed13g0474 Sed-Chr13:3219977 1.10E-76 dispersed
Sed11g2271 Sed-Chr11:35937671 Sed13g0474 Sed-Chr13:3219977 2.10E-68 dispersed
Sed13g0474 Sed-Chr13:3219977 Sed14g0175 Sed-Chr14:2025355 4.10E-42 dispersed
Sed13g0474 Sed-Chr13:3219977 Sed05g3729 Sed-Chr5:45202680 2.10E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80070 PF00069 Pkinase 6.40E-29 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0474 - - - 0.0