Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0477 ATGGCAATGCATCGGTATGAACAATCTGACCACGAAGCTCAAACCCATTTGATTTCGCTGGATTCTCTGTATTGTGAGGAGGAGAAATGGGAAGATGATGAAGATGGTGAAGATGAAGCTGAGATTGAACAAACCCATCTAATGAATCAGTCCCATCTTTTTTCTTTGGGGTTTTTTGAGGAAGATCTCTTTGAAGAAGATGAACGGCTTCTATCCTTGTTATCTAAAGAAACAGAGCAGCTAAAACAGAGCAATCTGGACCTTGAAGCTCTGTTAATGGATGCTTCTGTATCAGCTGCTCGTTATTCAGCTGTGGAGTGGATTCTCAAAGTCAAATCCCATTATGGGTTCTCCACTCTCACTGCAATTTTGGCGGTTTCTTATTTTGATAGGTTTCTCTTGAGCTTTCATTATAAGAGTGACAAGCCGTGGATGAACCAGCTTGTGGCTGTTACTTGCCTCTCGTTGGCGGCTAAAGTGGAGGAGATTCAAGTTCCTCTGCTGTTGGATCTTCAAGTTGAGGATGCTAAATATGTGTTTGAGGCTAAAACTATTCAGAGAATGGAGCTTCTAGTGCTCTCAACTCTTCAGTGGAGAATGCATTTGGTGACCCCATTTTCATTTCTTGATCACATTGTAAAGAGGCTTGGATTTAAGACCAATCTTCAGTTGGAGTTTTTTAGGTGTTCTGAGCACCTTCTCCTTTCTCTGCTCTCAGATTCAAGATTTGTTGGGTATCTTCCATCTGTGTTGGCAACTGCAACAATGATGAAAGTCATAGATCATATTGAACCATATGAGTCATTAGAACACCAAGATCAGCTTCTGGGTGTCCTCAAAATGAGCAAGGAAAAAGTGCAATGTTGTTACAATCTTGTTGTGGAACATTCAAAGGCTTATGGCACTGGCTTTTATCATCCCAACAATCCCCACAAGCGCAAGCATGAACATCACCAAGCTCCTGATAGCCCAAGTGGTGTTATTGATGCTGGTTTCAGCTCAGACAGCTCCAATGATTCTTGGGCACTGAGAGCATCATCAGTTTGTTCATCACCTGAACCTTCTTTCAAGAAGTCCAAAACTGAAGAGCCAAACCTGAAATTTCATCCTCTTAACAGGGTCTTTTTGGACATTGTTGGCAGCCCTTCTTAA 1152 41.93 MAMHRYEQSDHEAQTHLISLDSLYCEEEKWEDDEDGEDEAEIEQTHLMNQSHLFSLGFFEEDLFEEDERLLSLLSKETEQLKQSNLDLEALLMDASVSAARYSAVEWILKVKSHYGFSTLTAILAVSYFDRFLLSFHYKSDKPWMNQLVAVTCLSLAAKVEEIQVPLLLDLQVEDAKYVFEAKTIQRMELLVLSTLQWRMHLVTPFSFLDHIVKRLGFKTNLQLEFFRCSEHLLLSLLSDSRFVGYLPSVLATATMMKVIDHIEPYESLEHQDQLLGVLKMSKEKVQCCYNLVVEHSKAYGTGFYHPNNPHKRKHEHHQAPDSPSGVIDAGFSSDSSNDSWALRASSVCSSPEPSFKKSKTEEPNLKFHPLNRVFLDIVGSPS 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3252165 3254584 - Sed0018599.1 Sed13g0477 733987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0477 383 CDD CYCLIN_AtCycD-like_rpt1 100 198 - -
Sed13g0477 383 MobiDBLite consensus disorder prediction 343 363 - -
Sed13g0477 383 PANTHER CYCLINS 53 295 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed13g0477 383 Pfam Cyclin, N-terminal domain 97 200 IPR006671 -
Sed13g0477 383 Pfam Cyclin, C-terminal domain 203 303 IPR004367 -
Sed13g0477 383 Gene3D - 83 201 - -
Sed13g0477 383 FunFam D3-type cyclin 94 201 - -
Sed13g0477 383 Gene3D - 73 291 - -
Sed13g0477 383 FunFam CYCLIN D32 202 291 - -
Sed13g0477 383 SUPERFAMILY Cyclin-like 67 201 IPR036915 -
Sed13g0477 383 ProSitePatterns Cyclins signature. 101 132 IPR048258 -
Sed13g0477 383 SMART cyclin_7 106 194 IPR013763 -
Sed13g0477 383 MobiDBLite consensus disorder prediction 304 329 - -
Sed13g0477 383 SMART Cyclin_C_2 203 339 IPR004367 -
Sed13g0477 383 CDD CYCLIN_AtCycD-like_rpt2 203 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0930 Sed-Chr11:23081413 Sed13g0477 Sed-Chr13:3252165 2.00E-70 dispersed
Sed13g0477 Sed-Chr13:3252165 Sed14g0876 Sed-Chr14:17592829 1.50E-61 dispersed
Sed10g2003 Sed-Chr10:36608449 Sed13g0477 Sed-Chr13:3252165 2.00E-60 wgd
Sed13g0477 Sed-Chr13:3252165 Sed13g1781 Sed-Chr13:22857081 1.60E-63 wgd
Sed13g0477 Sed-Chr13:3252165 Sed07g1293 Sed-Chr7:9701896 3.90E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0477 K14505 - csv:101221213 585.104