Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0482 ATGGCGGCTCAGGTTCAAGCTCAGCCTCAGAATGTTGTTTCCGGTGTCATTCCGGCAGTGGCCAATGGTGCTGCTGCTGCCAATTTTGTGACTACTTCTTTGTATGTTGGAGATCTGGACTTGAATGTCACGGATTCGCAGCTTTATGATATATTTAATCAGGTTGGTCAGGTGGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGTTCTCTCGGCTATGGTTATGTCAACTTCAGCAACCAACCAGATGCTGCTAGAGCATTGGATGTGCTGAATTTTAACCCTTTGAATGGAAAACCTATTAGAGTTATGTATTCTCACCGTGATCCTAGCATTCGCAAAAGTGGCTCTGGAAATATATTTATCAAGAATTTAGACAAAGCAATTGACCACAAAGCTTTGCATGATACTTTTTCTGCATTTGGTAGTATCATGTCTTGCAAAGTGGCTTTAGACTCCTCGGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACCATGAGGAGTCTGCTTTGAAAGCTATTGATAAGTTGAACGGTATGCTTTTGAATGATAAGCAAGTTTATGTGGGACCCTTTCTGCGCAAACAAGAAAGAGATAGTTCTGTTGACAAATCCAAATTTAACAATGTATTTGTCAAGAATCTTTCGGAGACAGCTACTGAAGAAGATTTGAACAAGGTTTTTTCTGAATTTGGGACAATCACTAGTATTGTTGTGATGAGGGATGCCGATGGTAAATCAAAATGCTTTGGATTTGTGAATTTTGAAAATACTGATGATGCTGCCAGGGCAGTTGATTCCCTTAATGGTAAGGCATTTGAAGATAAGGAATGGTATGTTGGGAAAGCTCAGAAAAAATCTGATAGAGAAGTAGAATTAAAGCACAGGTATGAACAAACCATGAAAGAGGCAGCTGACAAATACCAGGGGGCAAATTTGTACATAAAAAATTTAGATGATAGCATTAGTGATGAAAAGCTTAAAGAGGTCTTTGCTCCATTTGGCACTATCACCTCATGCAAGGTCATGTGCGACCCCAATGGTATAAGTAGAGGTTCTGGATTTGTTGCATTCTCAACCCCTGAAGAGGCATCTAGAGCTCTGATGGAGATGAATGGCAAAATGGTTGCTAGCAAACCATTGTATGTAGCACTTGCACAGAGGAAAGAAGACAGAAGAGCTAGATTGCAGGCTCAGTTCTCTCAAATACGACCAGTTGCCATGGCTGCTTCTGTTGCCCCTCGGATGCCAATGTATCCCCCAGGTGGTCCAGGCATCGGACAACAAATGTTTTATGGTCAAGGTCCTCCTGCAATGATTCCGTCCCAAGGTGGCTTTGGTTATCAGCAGCAACTTGTTCCTGGTATAAGGCCTGGTGGAGGACCAATGCCGAATTTCTTTGTTCCGGTGGTTCAGCAGGGTCAGCAAGGCCAGCGCCCTGGCGGCAGACGAGCAGGAGGTGTTCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGATATCCCCAAGGAAGAGGTTTGCCGGATGTTTCTATGCCTGGTGTTGCTGGAGGCATGTTCTCTGTTCCATATGACATGGGTGGTATGCCGATACGTGATGCGACACTCTCCTCTCAACCTATTCCTATAGGTGCTCTTGCATCCGCTCTGGCAAATTCTTCTCCAGACCAACAACGAATGATGCTGGGAGAGAACCTTTACCCGCTCGTGGAACAGTTGGAGCCCGACAATGCGGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAAACTGAGGTCTTGCATTTGCTCGAGTCTCCAGAGGCTTTGAAGGCCAAAGTGGCTGAGGCAATGGACGTTTTGAGGAATGTAGCCACAGCAGCTCAGCAAGCTGGCAATGCCGCTGCTGATCAGCTAGCTTCTTTGTCGCTGACCGAGAACCTAGTGTCGTAA 1974 45.59 MAAQVQAQPQNVVSGVIPAVANGAAAANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNQPDAARALDVLNFNPLNGKPIRVMYSHRDPSIRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSIMSCKVALDSSGQSKGYGFVQFDHEESALKAIDKLNGMLLNDKQVYVGPFLRKQERDSSVDKSKFNNVFVKNLSETATEEDLNKVFSEFGTITSIVVMRDADGKSKCFGFVNFENTDDAARAVDSLNGKAFEDKEWYVGKAQKKSDREVELKHRYEQTMKEAADKYQGANLYIKNLDDSISDEKLKEVFAPFGTITSCKVMCDPNGISRGSGFVAFSTPEEASRALMEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQIRPVAMAASVAPRMPMYPPGGPGIGQQMFYGQGPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPVVQQGQQGQRPGGRRAGGVQQTQQPVPMMQQQMLPRGGRVYRYPQGRGLPDVSMPGVAGGMFSVPYDMGGMPIRDATLSSQPIPIGALASALANSSPDQQRMMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVATAAQQAGNAAADQLASLSLTENLVS 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3303081 3308508 + Sed0013120.1 Sed13g0482 733992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0482 657 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 556 633 IPR002004 GO:0003723(InterPro)
Sed13g0482 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723(InterPro)
Sed13g0482 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723(InterPro)
Sed13g0482 657 SUPERFAMILY RNA-binding domain, RBD 32 201 IPR035979 GO:0003676(InterPro)
Sed13g0482 657 CDD RRM1_I_PABPs 33 112 IPR034364 -
Sed13g0482 657 SUPERFAMILY PABC (PABP) domain 498 639 IPR036053 GO:0003723(InterPro)
Sed13g0482 657 FunFam Polyadenylate-binding protein 121 194 - -
Sed13g0482 657 Gene3D - 122 200 IPR012677 -
Sed13g0482 657 Gene3D - 552 633 - -
Sed13g0482 657 SUPERFAMILY RNA-binding domain, RBD 211 395 IPR035979 GO:0003676(InterPro)
Sed13g0482 657 CDD RRM3_I_PABPs 210 289 - -
Sed13g0482 657 FunFam Polyadenylate-binding protein 297 402 - -
Sed13g0482 657 FunFam Polyadenylate-binding protein 19 120 - -
Sed13g0482 657 Pfam RNA recognition motif 122 190 IPR000504 GO:0003723(InterPro)
Sed13g0482 657 Pfam RNA recognition motif 34 104 IPR000504 GO:0003723(InterPro)
Sed13g0482 657 Pfam RNA recognition motif 316 384 IPR000504 GO:0003723(InterPro)
Sed13g0482 657 Pfam RNA recognition motif 213 281 IPR000504 GO:0003723(InterPro)
Sed13g0482 657 Gene3D - 23 121 IPR012677 -
Sed13g0482 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 192 IPR000504 GO:0003723(InterPro)
Sed13g0482 657 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 33 629 IPR006515 GO:0003723(InterPro)
Sed13g0482 657 SMART rrm1_1 212 284 IPR000504 GO:0003723(InterPro)
Sed13g0482 657 SMART rrm1_1 315 387 IPR000504 GO:0003723(InterPro)
Sed13g0482 657 SMART rrm1_1 121 193 IPR000504 GO:0003723(InterPro)
Sed13g0482 657 SMART rrm1_1 33 106 IPR000504 GO:0003723(InterPro)
Sed13g0482 657 CDD RRM2_I_PABPs 118 194 IPR045305 -
Sed13g0482 657 Pfam Poly-adenylate binding protein, unique domain 563 628 IPR002004 GO:0003723(InterPro)
Sed13g0482 657 SMART poly_2 568 631 IPR002004 GO:0003723(InterPro)
Sed13g0482 657 CDD RRM4_I_PABPs 313 391 - -
Sed13g0482 657 FunFam Polyadenylate-binding protein 552 634 - -
Sed13g0482 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 391 IPR000504 GO:0003723(InterPro)
Sed13g0482 657 Gene3D - 201 295 IPR012677 -
Sed13g0482 657 Gene3D - 296 403 IPR012677 -
Sed13g0482 657 PANTHER RNA BINDING PROTEIN 29 213 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Sed13g0482 657 SMART rrm2_1 33 106 IPR003954 GO:0003676(InterPro)
Sed13g0482 657 SMART rrm2_1 315 387 IPR003954 GO:0003676(InterPro)
Sed13g0482 657 SMART rrm2_1 212 284 IPR003954 GO:0003676(InterPro)
Sed13g0482 657 SMART rrm2_1 121 193 IPR003954 GO:0003676(InterPro)
Sed13g0482 657 FunFam Polyadenylate-binding protein 201 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1427 Sed-Chr4:28836323 Sed13g0482 Sed-Chr13:3303081 7.30E-133 dispersed
Sed07g0360 Sed-Chr7:2720160 Sed13g0482 Sed-Chr13:3303081 8.90E-11 dispersed
Sed11g1386 Sed-Chr11:29852935 Sed13g0482 Sed-Chr13:3303081 6.60E-190 dispersed
Sed12g0700 Sed-Chr12:4174439 Sed13g0482 Sed-Chr13:3303081 3.20E-27 dispersed
Sed13g0482 Sed-Chr13:3303081 Sed12g2008 Sed-Chr12:30951967 8.30E-07 dispersed
Sed10g2019 Sed-Chr10:36768905 Sed13g0482 Sed-Chr13:3303081 1.30E-291 wgd
Sed13g0482 Sed-Chr13:3303081 Sed05g2592 Sed-Chr5:37650850 2.20E-297 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0482 K13126 - csv:101219802 1113.6