Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0489 ATGCCTGCAACTGTGGCCGTCCAGCCCTTGGATTTGAGCCTGCAGATTCCCTACCATTTCCGCTGCCCCATCTCCCTCGAGCTCATGCACGACCCGGTCACCGTCGCCACCGGCCAGACCTACGACCGCTCCAGCATCGAGGCCTGGGTCGCCACCGGCAACACCACCTGCCCGGTCACCCGAGCCTTCATCTCCGACTTCACTCTCATCCCTAACCATACCCTCCGGCGGCTCATTCAGGACTGGTGCGTCGCCAATCGGAGATTCGGCGTTGAGCGGATCCCGACGCCCAAGCAGCCGGCGGATCCGTCGCTCGTGAGATCCATTCTGGCTCAGGTTTCGTCCAGATCCAACGGTTTCGGTTCTCGAATCTCCGCTCTCCGGCGGTTGAAAGGACTCGCTCGCGACTCCGATGTCAATCGCTCTGTCATTTCCTCTCTCAATGCTTCTGAAATTCTGATCGATCTTCTGTTTCTGGATTTGGATATGGAGTCCGTTTCGATTTCTGTTACGGATTCTGATCATTTGCGCCGCGAATCGCTCGCGATGATCGTGATGTTGCCGCTCACGGAATCTGAGTGCGTTCTCGTCGCGTCAGATCCGCAACGGATCCGTTACGTTTCGAATCTCCTGTTCGATTCGTCGGTCGAGGTTCGGATCAACGCCGCGGCCTTGATCGAGGTCGTCATCGCCGGGACGCGAGATTCGGAGCTCCGAGGTCGAATCTGCGGGACCGACGAGATCTTCGAAGGCGTGGTGGAGATTCTCCGGCGTTCGCCGGCGTATCCTCGCGCGCTGAAGGTCGGAATCAAGGCCTTGTTCGCTCTCTGTTTGGTGAAATCGACTCGCCTCAAGGCGGTCTCCGCCGGCGCCGTCGAGATTCTCGTCGATCGGTTCCACGATTTGGAGAAGTACGACGCCGAGCGAGCTCTGGCGACGATGGAGCTCATCTGCAGGATTCCGGGCGGTTGCGCGGCGTTTGGCGCTCACGCGGTGACGGTTCCGTTGCTTGTGAAGGTGATTCTGAAGATTTCGGACAGGGCGACGGAGTCGGCGGTGGGGGCTCTGGTGTCGCTGTGCTCGGGGGCGGAGGAGAGGCGGCGGGAGGCGGTGGCGGCGGGGATTTTCACGCAGTTGCTGCTGCTGGTGCAGAGCGATTGTACGGAGCGGGTGAAGCGGAAATCGCAGGTGCTGTTGAAGCTTTTGAGAGATTCATGGCCGCAAGATTCCGTTGGAAATTCCGATGACTATAATTGCAGCGAAATCGTGGTACAGTTTTGTTAA 1284 59.03 MPATVAVQPLDLSLQIPYHFRCPISLELMHDPVTVATGQTYDRSSIEAWVATGNTTCPVTRAFISDFTLIPNHTLRRLIQDWCVANRRFGVERIPTPKQPADPSLVRSILAQVSSRSNGFGSRISALRRLKGLARDSDVNRSVISSLNASEILIDLLFLDLDMESVSISVTDSDHLRRESLAMIVMLPLTESECVLVASDPQRIRYVSNLLFDSSVEVRINAAALIEVVIAGTRDSELRGRICGTDEIFEGVVEILRRSPAYPRALKVGIKALFALCLVKSTRLKAVSAGAVEILVDRFHDLEKYDAERALATMELICRIPGGCAAFGAHAVTVPLLVKVILKISDRATESAVGALVSLCSGAEERRREAVAAGIFTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQDSVGNSDDYNCSEIVVQFC 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3337258 3339009 - Sed0012856.1 Sed13g0489 733999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0489 427 Gene3D - 96 422 IPR011989 -
Sed13g0489 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 89 IPR013083 -
Sed13g0489 427 ProSiteProfiles U-box domain profile. 15 89 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed13g0489 427 Pfam U-box domain 16 87 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed13g0489 427 CDD RING-Ubox_PUB 17 69 IPR045210 -
Sed13g0489 427 FunFam U-box domain-containing protein 31 15 89 - -
Sed13g0489 427 SMART Ubox_2 19 82 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed13g0489 427 PANTHER WDSAM1 PROTEIN 14 409 IPR045185 GO:0061630(InterPro)
Sed13g0489 427 SUPERFAMILY ARM repeat 122 402 IPR016024 -
Sed13g0489 427 SUPERFAMILY RING/U-box 13 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2700 Sed-Chr5:38426075 Sed13g0489 Sed-Chr13:3337258 1.00E-53 dispersed
Sed10g0492 Sed-Chr10:3191672 Sed13g0489 Sed-Chr13:3337258 2.00E-32 dispersed
Sed11g0913 Sed-Chr11:22329183 Sed13g0489 Sed-Chr13:3337258 1.50E-31 dispersed
Sed12g1402 Sed-Chr12:11502734 Sed13g0489 Sed-Chr13:3337258 1.60E-11 dispersed
Sed12g1495 Sed-Chr12:19913221 Sed13g0489 Sed-Chr13:3337258 8.20E-32 dispersed
Sed13g0489 Sed-Chr13:3337258 Sed14g0533 Sed-Chr14:5329167 8.80E-50 dispersed
Sed13g1564 Sed-Chr13:20827929 Sed13g0489 Sed-Chr13:3337258 1.50E-11 dispersed
Sed13g1565 Sed-Chr13:20827929 Sed13g0489 Sed-Chr13:3337258 1.50E-11 dispersed
Sed05g3850 Sed-Chr5:46123207 Sed13g0489 Sed-Chr13:3337258 2.20E-39 transposed
Sed13g0489 Sed-Chr13:3337258 Sed07g1298 Sed-Chr7:9748321 1.60E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0489 - - - 0.0