Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g0489 | ATGCCTGCAACTGTGGCCGTCCAGCCCTTGGATTTGAGCCTGCAGATTCCCTACCATTTCCGCTGCCCCATCTCCCTCGAGCTCATGCACGACCCGGTCACCGTCGCCACCGGCCAGACCTACGACCGCTCCAGCATCGAGGCCTGGGTCGCCACCGGCAACACCACCTGCCCGGTCACCCGAGCCTTCATCTCCGACTTCACTCTCATCCCTAACCATACCCTCCGGCGGCTCATTCAGGACTGGTGCGTCGCCAATCGGAGATTCGGCGTTGAGCGGATCCCGACGCCCAAGCAGCCGGCGGATCCGTCGCTCGTGAGATCCATTCTGGCTCAGGTTTCGTCCAGATCCAACGGTTTCGGTTCTCGAATCTCCGCTCTCCGGCGGTTGAAAGGACTCGCTCGCGACTCCGATGTCAATCGCTCTGTCATTTCCTCTCTCAATGCTTCTGAAATTCTGATCGATCTTCTGTTTCTGGATTTGGATATGGAGTCCGTTTCGATTTCTGTTACGGATTCTGATCATTTGCGCCGCGAATCGCTCGCGATGATCGTGATGTTGCCGCTCACGGAATCTGAGTGCGTTCTCGTCGCGTCAGATCCGCAACGGATCCGTTACGTTTCGAATCTCCTGTTCGATTCGTCGGTCGAGGTTCGGATCAACGCCGCGGCCTTGATCGAGGTCGTCATCGCCGGGACGCGAGATTCGGAGCTCCGAGGTCGAATCTGCGGGACCGACGAGATCTTCGAAGGCGTGGTGGAGATTCTCCGGCGTTCGCCGGCGTATCCTCGCGCGCTGAAGGTCGGAATCAAGGCCTTGTTCGCTCTCTGTTTGGTGAAATCGACTCGCCTCAAGGCGGTCTCCGCCGGCGCCGTCGAGATTCTCGTCGATCGGTTCCACGATTTGGAGAAGTACGACGCCGAGCGAGCTCTGGCGACGATGGAGCTCATCTGCAGGATTCCGGGCGGTTGCGCGGCGTTTGGCGCTCACGCGGTGACGGTTCCGTTGCTTGTGAAGGTGATTCTGAAGATTTCGGACAGGGCGACGGAGTCGGCGGTGGGGGCTCTGGTGTCGCTGTGCTCGGGGGCGGAGGAGAGGCGGCGGGAGGCGGTGGCGGCGGGGATTTTCACGCAGTTGCTGCTGCTGGTGCAGAGCGATTGTACGGAGCGGGTGAAGCGGAAATCGCAGGTGCTGTTGAAGCTTTTGAGAGATTCATGGCCGCAAGATTCCGTTGGAAATTCCGATGACTATAATTGCAGCGAAATCGTGGTACAGTTTTGTTAA | 1284 | 59.03 | MPATVAVQPLDLSLQIPYHFRCPISLELMHDPVTVATGQTYDRSSIEAWVATGNTTCPVTRAFISDFTLIPNHTLRRLIQDWCVANRRFGVERIPTPKQPADPSLVRSILAQVSSRSNGFGSRISALRRLKGLARDSDVNRSVISSLNASEILIDLLFLDLDMESVSISVTDSDHLRRESLAMIVMLPLTESECVLVASDPQRIRYVSNLLFDSSVEVRINAAALIEVVIAGTRDSELRGRICGTDEIFEGVVEILRRSPAYPRALKVGIKALFALCLVKSTRLKAVSAGAVEILVDRFHDLEKYDAERALATMELICRIPGGCAAFGAHAVTVPLLVKVILKISDRATESAVGALVSLCSGAEERRREAVAAGIFTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQDSVGNSDDYNCSEIVVQFC | 427 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 3337258 | 3339009 | - | Sed0012856.1 | Sed13g0489 | 733999 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g0489 | 427 | Gene3D | - | 96 | 422 | IPR011989 | - | |
Sed13g0489 | 427 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 15 | 89 | IPR013083 | - | |
Sed13g0489 | 427 | ProSiteProfiles | U-box domain profile. | 15 | 89 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed13g0489 | 427 | Pfam | U-box domain | 16 | 87 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed13g0489 | 427 | CDD | RING-Ubox_PUB | 17 | 69 | IPR045210 | - | |
Sed13g0489 | 427 | FunFam | U-box domain-containing protein 31 | 15 | 89 | - | - | |
Sed13g0489 | 427 | SMART | Ubox_2 | 19 | 82 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed13g0489 | 427 | PANTHER | WDSAM1 PROTEIN | 14 | 409 | IPR045185 | GO:0061630(InterPro) | |
Sed13g0489 | 427 | SUPERFAMILY | ARM repeat | 122 | 402 | IPR016024 | - | |
Sed13g0489 | 427 | SUPERFAMILY | RING/U-box | 13 | 91 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g2700 | Sed-Chr5:38426075 | Sed13g0489 | Sed-Chr13:3337258 | 1.00E-53 | dispersed | |
Sed10g0492 | Sed-Chr10:3191672 | Sed13g0489 | Sed-Chr13:3337258 | 2.00E-32 | dispersed | |
Sed11g0913 | Sed-Chr11:22329183 | Sed13g0489 | Sed-Chr13:3337258 | 1.50E-31 | dispersed | |
Sed12g1402 | Sed-Chr12:11502734 | Sed13g0489 | Sed-Chr13:3337258 | 1.60E-11 | dispersed | |
Sed12g1495 | Sed-Chr12:19913221 | Sed13g0489 | Sed-Chr13:3337258 | 8.20E-32 | dispersed | |
Sed13g0489 | Sed-Chr13:3337258 | Sed14g0533 | Sed-Chr14:5329167 | 8.80E-50 | dispersed | |
Sed13g1564 | Sed-Chr13:20827929 | Sed13g0489 | Sed-Chr13:3337258 | 1.50E-11 | dispersed | |
Sed13g1565 | Sed-Chr13:20827929 | Sed13g0489 | Sed-Chr13:3337258 | 1.50E-11 | dispersed | |
Sed05g3850 | Sed-Chr5:46123207 | Sed13g0489 | Sed-Chr13:3337258 | 2.20E-39 | transposed | |
Sed13g0489 | Sed-Chr13:3337258 | Sed07g1298 | Sed-Chr7:9748321 | 1.60E-176 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g0489 | - | - | - | 0.0 |