Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0492 ATGGCGGCGGCTGCAGTGAGCAGAGGTTTATTTCTATTGGGGTTTCTTTTATTTCTTCGAATGCAGCTTCCTGAAACAATGGCGGATTGCCCCTTGGACTTGAGTGGATCAAACTTTACTATAGCTGCCTCTATTTGCTCAAACCCCAATGAAAGAGGGAAGTGTTGCCGCTATATCAATGCATTTGTTGCAGTTTCTGTTGCTCAGCTTGCAAATGCAACAGGTGAACTAGGGGTTTCTTCAAACTTATCTGACATTTGCTTGCAATCAATATTTCAAACCATGGGACTGTATGGAGTTCCTAGTAATGCCACTCTTTTCTGTGGGGTGGGAACAAAAATTCCGGTGAACTACACCTGTAGAGGTCGACAAACCGTCAACGAGATGCTGGAATCTCCAAAATTCTCAAATGTCAGTGAAAATTGCAAATTGCCCCTCTCAGAGGAGAGTGCTTGTAGGAAGTGTATCAATGCTGGGGCTTCATATCTCCGCAATCTGATTGGAAAAGAAGATAATATAACGTTGAATACTTGTCGCGACGCTACGTTTGTTGCACTTTCTAGTGAACTTGATCCTGCTTCAGTCGTTGACCTTGCAACTTGCTTTTTTGGAGCTCAAGGCCTTAACAGACCTTCAGCTCCATCCCCATCTTTGGCTACACCAGATATTTCCCCAAGTTCATCAGCTGCTGCAAGTCCAGGGCCACTAATGCTAAGCGTTTCTAATGATAAAAGTCATCAACATCATTCCTACAATCTAACATTAGTGGCAGGTGTTGGCATTGCAGTGACCTTAGCTTCTGTATTGATGCTGATTGTATTGATTGTGCTGATTCGAAGGAAAAACCGAGAGCTAAAGGATTCCGAAAAGACAGATATCAACTCGTCGAAATCCTTCCCTTCTCGTCCCATCAAAAAGTATCAGGAAGGACCTTCTATGTTCAAAAAATTCAGCTATAAGGAAATCAAGAAGGCAACGGATAGTTTTAGTACAACAATTGGACAAGGAGGCTATGGAACTGTTTATAAAGCTCAATTCGGTGATGACTTAGTGGTTGCTGTGAAGAGGATGAACAAAGTCTCCGAGCAAGGGGATGATGAATTTGGGAGAGAAATAGACCTGCTCGCGAGATTACATCACCGACATCTTGTCGCTTTAAGAGGCTTTTGCGTTGACAAGCATGAACGGTTTCTCGTGTACGAGTATATGGCTAACGGAAGCTTGAAGGATCATCTTCATGCTCCTGGCAGGACCCCTCTAAGTTGGCGGACGAGAATACAAATTGCCATCGATGTCGCCAATGCTCTGGAGTACCTTCACTATTATTGTGATCCCCCACTGTGCCACAGAGACATCAAGTCCAGCAACATTTTACTGGATGAGAACTTTGTTGCTAAGGTTGCAGATTTCGGCCTTGCGCATGCTTCAAAGGGCGGTTCTGTTTTCTTTGAACCTGTAAATACCGATATCCGTGGAACGCCAGGCTATATGGATCCCGAGTATGTTATCACGCAAGAGCTTACCGAGAAAAGTGATATATACAGCTACGGCGTGCTACTTCTAGAAATAGTAACCGGCAGACGTGCGATACAAGATAGGAGGAATCTAGTTGAATGGTCTGAGGTGCACATGGTTTCAGATTCAAGGATATCAGAACTAGTAGATCCAAGGATCAAGAGTTGTTTTAACTTGGAACAACTTCACACGGTCGTGTCGATAGTGAGATGGTGTACCGAGGGAGAAGGCAGGGTGAGGCCCTCGATTAAACAGGTGCTTCGGGTATTGTACGAGAGTTCGGATCCGATGCATCAAGGGCTGGTGGAAGCTGTTGATGATGAAGAATATGGAGGAAGTGAAGGGAGAGAGAGCATGAGCAAGAGAAAAATGCATAAAAGTGAAGTGATTTTTCAGAGTGGAGATGGAAGGTATCTTGCTTCTTCATCAAGCACAACTAGGTCATATTGTAGTAGAAGTTTTTTACTTGAAACTGGTTCACCACAATCCCCTCCAAATATTATGTCTGTCTCAGATCAATTGTTTTAG 2043 43.81 MAAAAVSRGLFLLGFLLFLRMQLPETMADCPLDLSGSNFTIAASICSNPNERGKCCRYINAFVAVSVAQLANATGELGVSSNLSDICLQSIFQTMGLYGVPSNATLFCGVGTKIPVNYTCRGRQTVNEMLESPKFSNVSENCKLPLSEESACRKCINAGASYLRNLIGKEDNITLNTCRDATFVALSSELDPASVVDLATCFFGAQGLNRPSAPSPSLATPDISPSSSAAASPGPLMLSVSNDKSHQHHSYNLTLVAGVGIAVTLASVLMLIVLIVLIRRKNRELKDSEKTDINSSKSFPSRPIKKYQEGPSMFKKFSYKEIKKATDSFSTTIGQGGYGTVYKAQFGDDLVVAVKRMNKVSEQGDDEFGREIDLLARLHHRHLVALRGFCVDKHERFLVYEYMANGSLKDHLHAPGRTPLSWRTRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKGGSVFFEPVNTDIRGTPGYMDPEYVITQELTEKSDIYSYGVLLLEIVTGRRAIQDRRNLVEWSEVHMVSDSRISELVDPRIKSCFNLEQLHTVVSIVRWCTEGEGRVRPSIKQVLRVLYESSDPMHQGLVEAVDDEEYGGSEGRESMSKRKMHKSEVIFQSGDGRYLASSSSTTRSYCSRSFLLETGSPQSPPNIMSVSDQLF 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3364519 3369643 + Sed0012679.1 Sed13g0492 734002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0492 680 PANTHER OS01G0750732 PROTEIN 158 631 IPR050885 -
Sed13g0492 680 FunFam Putative receptor-like protein kinase 403 603 - -
Sed13g0492 680 ProSiteProfiles Protein kinase domain profile. 327 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0492 680 SUPERFAMILY Protein kinase-like (PK-like) 308 596 IPR011009 -
Sed13g0492 680 MobiDBLite consensus disorder prediction 213 239 - -
Sed13g0492 680 FunFam Putative receptor-like protein kinase 296 402 - -
Sed13g0492 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0492 680 SMART serkin_6 327 596 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0492 680 Pfam SPARK 28 170 IPR043891 -
Sed13g0492 680 Pfam Protein kinase domain 330 593 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0492 680 Gene3D Transferase(Phosphotransferase) domain 1 403 614 - -
Sed13g0492 680 CDD STKc_IRAK 333 595 - -
Sed13g0492 680 Gene3D Phosphorylase Kinase; domain 1 290 402 - -
Sed13g0492 680 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0626 Sed-Chr5:4531828 Sed13g0492 Sed-Chr13:3364519 3.40E-47 dispersed
Sed07g1301 Sed-Chr7:9779688 Sed13g0492 Sed-Chr13:3364519 3.00E-222 dispersed
Sed07g2648 Sed-Chr7:41945007 Sed13g0492 Sed-Chr13:3364519 4.80E-64 dispersed
Sed07g2649 Sed-Chr7:41945209 Sed13g0492 Sed-Chr13:3364519 4.80E-64 dispersed
Sed13g0492 Sed-Chr13:3364519 Sed04g0541 Sed-Chr4:4018226 3.10E-65 dispersed
Sed13g0492 Sed-Chr13:3364519 Sed13g0493 Sed-Chr13:3364519 0.00E+00 tandem
Sed01g3221 Sed-Chr1:59375911 Sed13g0492 Sed-Chr13:3364519 4.70E-50 transposed
Sed13g0492 Sed-Chr13:3364519 Sed07g1300 Sed-Chr7:9779688 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80071 PF00069 Pkinase 3.60E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0492 - - - 0.0