Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0493 ATGGCGGCGGCTGCAGTGAGCAGAGGTTTATTTCTATTGGGGTTTCTTTTATTTCTTCGAATGCAGCTTCCTGAAACAATGGCGGAAAATTTCACAGATTGCCCCTTGGACTTGAGTGGATCAAACTTTACTATAGCTGCCTCTATTTGCTCAAACCCCAATGAAAGAGGGAAGTGTTGCCGCTATATCAATGCATTTGTTGCAGTTTCTGTTGCTCAGCTTGCAAATGCAACAGGTGAACTAGGGGTTTCTTCAAACTTATCTGACATTTGCTTGCAATCAATATTTCAAACCATGGGACTGTATGGAGTTCCTAGTAATGCCACTCTTTTCTGTGGGGTGGGAACAAAAATTCCGGTGAACTACACCTGTAGAGGTCGACAAACCGTCAACGAGATGCTGGAATCTCCAAAATTCTCAAATGTCAGTGAAAATTGCAAATTGCCCCTCTCAGAGGAGAGTGCTTGTAGGAAGTGTATCAATGCTGGGGCTTCATATCTCCGCAATCTGATTGGAAAAGAAGATAATATAACGTTGAATACTTGTCGCGACGCTACGTTTGTTGCACTTTCTAGTGAACTTGATCCTGCTTCAGTCGTTGACCTTGCAACTTGCTTTTTTGGAGCTCAAGGCCTTAACAGACCTTCAGCTCCATCCCCATCTTTGGCTACACCAGATATTTCCCCAAGTTCATCAGCTGCTGCAAGTCCAGGGCCACTAATGCTAAGCGTTTCTAATGATAAAAGTCATCAACATCATTCCTACAATCTAACATTAGTGGCAGGTGTTGGCATTGCAGTGACCTTAGCTTCTGTATTGATGCTGATTGTATTGATTGTGCTGATTCGAAGGAAAAACCGAGAGCTAAAGGATTCCGAAAAGACAGATATCAACTCGTCGAAATCCTTCCCTTCTCGTCCCATCAAAAAGTATCAGGAAGGACCTTCTATGTTCAAAAAATTCAGCTATAAGGAAATCAAGAAGGCAACGGATAGTTTTAGTACAACAATTGGACAAGGAGGCTATGGAACTGTTTATAAAGCTCAATTCGGTGATGACTTAGTGGTTGCTGTGAAGAGGATGAACAAAGTCTCCGAGCAAGGGGATGATGAATTTGGGAGAGAAATAGACCTGCTCGCGAGATTACATCACCGACATCTTGTCGCTTTAAGAGGCTTTTGCGTTGACAAGCATGAACGGTTTCTCGTGTACGAGTATATGGCTAACGGAAGCTTGAAGGATCATCTTCATGCTCCTGGCAGGACCCCTCTAAGTTGGCGGACGAGAATACAAATTGCCATCGATGTCGCCAATGCTCTGGAGTACCTTCACTATTATTGTGATCCCCCACTGTGCCACAGAGACATCAAGTCCAGCAACATTTTACTGGATGAGAACTTTGTTGCTAAGGTTGCAGATTTCGGCCTTGCGCATGCTTCAAAGGGCGGTTCTGTTTTCTTTGAACCTGTAAATACCGATATCCGTGGAACGCCAGGCTATATGGATCCCGAGTATGTTATCACGCAAGAGCTTACCGAGAAAAGTGATATATACAGCTACGGCGTGCTACTTCTAGAAATAGTAACCGGCAGACGTGCGATACAAGATAGGAGGAATCTAGTTGAATGGTCTGAGGTGCACATGGTTTCAGATTCAAGGATATCAGAACTAGTAGATCCAAGGATCAAGAGTTGTTTTAACTTGGAACAACTTCACACGGTCGTGTCGATAGTGAGATGGTGTACCGAGGGAGAAGGCAGGGTGAGGCCCTCGATTAAACAGGTGCTTCGGGTATTGTACGAGAGTTCGGATCCGATGCATCAAGGGCTGGTGGAAGCTGTTGATGATGAAGAATATGGAGGAAGTGAAGGGAGAGAGAGCATGAGCAAGAGAAAAATGCATAAAAGTGAAGTGATTTTTCAGAGTGGAGATGGAAGGTATCTTGCTTCTTCATCAAGCACAACTAGGTCATATTGTAGTAGAAGTTTTTTACTTGAAACTGGTTCACCACAATCCCCTCCAAATATTATGTCTGTCTCAGATCAATTGTTTTAG 2055 43.7 MAAAAVSRGLFLLGFLLFLRMQLPETMAENFTDCPLDLSGSNFTIAASICSNPNERGKCCRYINAFVAVSVAQLANATGELGVSSNLSDICLQSIFQTMGLYGVPSNATLFCGVGTKIPVNYTCRGRQTVNEMLESPKFSNVSENCKLPLSEESACRKCINAGASYLRNLIGKEDNITLNTCRDATFVALSSELDPASVVDLATCFFGAQGLNRPSAPSPSLATPDISPSSSAAASPGPLMLSVSNDKSHQHHSYNLTLVAGVGIAVTLASVLMLIVLIVLIRRKNRELKDSEKTDINSSKSFPSRPIKKYQEGPSMFKKFSYKEIKKATDSFSTTIGQGGYGTVYKAQFGDDLVVAVKRMNKVSEQGDDEFGREIDLLARLHHRHLVALRGFCVDKHERFLVYEYMANGSLKDHLHAPGRTPLSWRTRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKGGSVFFEPVNTDIRGTPGYMDPEYVITQELTEKSDIYSYGVLLLEIVTGRRAIQDRRNLVEWSEVHMVSDSRISELVDPRIKSCFNLEQLHTVVSIVRWCTEGEGRVRPSIKQVLRVLYESSDPMHQGLVEAVDDEEYGGSEGRESMSKRKMHKSEVIFQSGDGRYLASSSSTTRSYCSRSFLLETGSPQSPPNIMSVSDQLF 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3364519 3369643 + Sed0012679.2 Sed13g0493 734003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0493 684 Gene3D Phosphorylase Kinase; domain 1 294 406 - -
Sed13g0493 684 Pfam SPARK 32 174 IPR043891 -
Sed13g0493 684 FunFam Putative receptor-like protein kinase 300 406 - -
Sed13g0493 684 Pfam Protein kinase domain 334 597 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0493 684 PANTHER OS01G0750732 PROTEIN 162 635 IPR050885 -
Sed13g0493 684 SUPERFAMILY Protein kinase-like (PK-like) 312 600 IPR011009 -
Sed13g0493 684 SMART serkin_6 331 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0493 684 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524(InterPro)
Sed13g0493 684 MobiDBLite consensus disorder prediction 217 243 - -
Sed13g0493 684 Gene3D Transferase(Phosphotransferase) domain 1 407 618 - -
Sed13g0493 684 FunFam Putative receptor-like protein kinase 407 607 - -
Sed13g0493 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0493 684 ProSiteProfiles Protein kinase domain profile. 331 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0493 684 CDD STKc_IRAK 337 599 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3221 Sed-Chr1:59375911 Sed13g0493 Sed-Chr13:3364519 4.70E-50 dispersed
Sed07g1300 Sed-Chr7:9779688 Sed13g0493 Sed-Chr13:3364519 1.1e-312 dispersed
Sed13g0493 Sed-Chr13:3364519 Sed04g0541 Sed-Chr4:4018226 3.10E-65 dispersed
Sed13g0492 Sed-Chr13:3364519 Sed13g0493 Sed-Chr13:3364519 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80072 PF00069 Pkinase 3.60E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0493 - - - 0.0