Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0512 ATGTCATTCCGTAGTATAGTTCGCGATGTGAGGGACAGCATTGGGAGCTTGTCTAGACGGGGCTTCGAGGTCAAGCTGAGTGGTCATCATAGAGGAAAGTCGAATGTTTCGTCGTTGAGTGATCTACATGATCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAATCTTCCACCGGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAGAGCACATGGCCTTCACGAAGGTATGTCGTTTCCTGTGCTGCAGTATGCCGTTCTTGGAGAACTATGTGCATGGAGATCGTTAAAGGCCCCGAAATTTGTGGGAAGCTTACTTTCCCAGTGTCACTGAAGCAGCCAGGACCCCGAGAAACATCAGTTCAGTGCTTCATTAAGAGGGATAAATCCAACCTTACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAGTTTCTTCTTGCTGCAAAGCGTACGCGAAGAACTACCAGCACAGAGTACATTATCTCAATGGATGCGGATAACGTTTCGAGATCAAGTAGCGCTTACATCGGAAAGCTAAGGTCAAACTTTCTTGGAACAAAATTCATTGTCTATGATACTCAACCTTCATACACCGCAGCCCCTGCTCCTCCTCCCGGGAAAACTAGTCGTAGATTTTACTCGAAAAAGGTCTCGCCAAAAGTCCCCACTGGCAGTTATAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGAGGACCCCGAAGAATGCATTGTATAATGCATTCGATACCAGTGGCAGCTCTCGATGCAGGTGGAACCGTTCCAGGCCAACCCGAGCTCCTCCCTCTCAACTCGCTCAACTCTCTCAACGACTCATTTCGAAGTGCATCCTTATCCAAAAGACTAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCCGAAATCGGGAGGGCAGCTTTGGACGGAGACGAGGATGGAAAGATGAGACCTTTAGTTCTTAAAAACAAGCCCCCAAGATGGCACGAACAGCTGCAATGTTGGTGCCTCAACTTCCGTGGGCGAGTAACTGTTGCATCAGTTAAGAACTTCCAGTTGATCGCCGCTACACAGCCAGCCGCTGGTGCTCCAACGCCGTCTCAACCAGGTCCTCCCGAGCACGACAAGATCATCCTGCAGTTCGGCAAGGTCGGTAAAGACATCTTCACGATGGACTATCGATATCCGCTCTCTGCTTTTCAGGCCTTTGCAATATGCTTGAGCAGCTTTGATACCAAGTTGGCTTGTGAATAA 1296 48.15 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNVSSLSDLHDQPPVVQNGCWANLPPELLYDVIRRLEESESTWPSRRYVVSCAAVCRSWRTMCMEIVKGPEICGKLTFPVSLKQPGPRETSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLAAKRTRRTTSTEYIISMDADNVSRSSSAYIGKLRSNFLGTKFIVYDTQPSYTAAPAPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVAALDAGGTVPGQPELLPLNSLNSLNDSFRSASLSKRLDHSMEFSSARFSEIGRAALDGDEDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPGPPEHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLSSFDTKLACE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3488451 3492423 - Sed0012190.2 Sed13g0512 734022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0512 431 PANTHER TUBBY-RELATED 44 430 - -
Sed13g0512 431 Gene3D Tubby Protein; Chain A 111 431 IPR025659 -
Sed13g0512 431 FunFam Tubby-like F-box protein 111 431 - -
Sed13g0512 431 CDD F-box_AtTLP-like 54 98 - -
Sed13g0512 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Sed13g0512 431 Pfam Tub family 115 426 IPR000007 -
Sed13g0512 431 PRINTS Tubby superfamily signature 353 369 IPR000007 -
Sed13g0512 431 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Sed13g0512 431 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Sed13g0512 431 PRINTS Tubby superfamily signature 335 352 IPR000007 -
Sed13g0512 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Sed13g0512 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Sed13g0512 431 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Sed13g0512 431 SUPERFAMILY Tubby C-terminal domain-like 103 431 IPR025659 -
Sed13g0512 431 ProSitePatterns Tub family signature 1. 353 366 IPR018066 -
Sed13g0512 431 Pfam F-box-like 54 97 IPR001810 GO:0005515(InterPro)
Sed13g0512 431 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515(InterPro)
Sed13g0512 431 Gene3D - 49 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1630 Sed-Chr4:31025206 Sed13g0512 Sed-Chr13:3488451 4.60E-232 dispersed
Sed13g0512 Sed-Chr13:3488451 Sed13g0889 Sed-Chr13:6591280 1.30E-128 dispersed
Sed13g0511 Sed-Chr13:3488451 Sed13g0512 Sed-Chr13:3488451 8.70E-255 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40354 PF01167 Tub 6.90E-115 CL0395 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0512 K19600 - csv:101216314 800.431