Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0515 ATGGAGATTGATCTATCACTCAAAATAGATCATCACAAACAAGATTGGAAACAAAAAACTCACCAAAAAGATGAACAAAAACAACAACAACAACAAATGGGAGTTGATGAAGCTGAAATTCATGATCTTGCTAACTCTGGTTTGCAAGTGTTTTTGCCACTCAACAACATAATTGATGCAGAAGAGATTTCGGAGTTGCAGATGGAGATGGATCGTATGAAAGAAGAGAACAAGATGTTGAGAAAAGCAGTGGAACAAACAATGAAAGATTACTATGATCTTGAAATGAAAATTGGTATCATCCAACAAAACAACCTCTACAAAAAGAACTCTCACAACTTTCTATCCCTCCATGGCAATGAAAACAAAATGCCCGAACTCGAAATCGGAGAATCAGTGAAGAAGAGACGAGTTCGGTCGCCATCAAAGGACACCGAGATGCGAGAAAGCGAACTAGGGTTATCATTAGGGCTTCACACAAACAATGATTTTGAACAAGATAATAACCATAGAGATATTATTCAACAAGAAGAAACAAGAGAAAAGAACAAAGAAGACCTAGCATCCAATTTCAACTCATTAATGCAAAACAAATCTCAAAGGACTGAGTTGCAAGGAATGGCACCCCCACAAAACAGAAAAGCTAGGGTTTCTGTTAGGGCAAGATGTGAAGCTGCCACAATGAATGACGGTTGCCAATGGAGGAAATATGGTCAAAAAATTGCGAAGGGAAACCCGTGCCCTCGAGCTTATTATCGATGCACAGTTGCTCCAGGATGTCCAGTTAGAAAACAGGTCCAAAGATGCTTAGAAGACATGTCAATTCTCATAACAACATACGAAGGAACACACAACCATCCACTTCCTGTGGGGGCCACAGCCATGGCTTCAACAGCCTCTGCAGCCACTTCTTTCATGCTATTAGACTCTCTCCCAAACCCTCAAAACCCTAATATCCTCAACTCCTCTTCCTACTCTCCGACCTTCTTCGAAACCCTAAACTCTAACGAGCCCTCGAAAGGGCTCGCCGTCGACCTTACAAGCAACAACTTTTACGCGAGCGCATCGGGCTCCGTCTTGGCCCAACCGTTGAATAGTACGAAAACGAGTGGTCAGTACTATTCGTACTATCATAGGAGCTTTCAACCTAATTTATTTAGTACTCCCCTTGACGGGCGGACGTGGAAACCTGCAGAGAACGATAAGCCGTCGTTGACGGCCGAGAGCGTGTCTGCTATTGCTTCGGATCCCAAGTTTCGTGTCGCAGTTGCAGCTGCCATTTCGTCGCTCATGAACAAAGAGAATAGTCGTACGAGCATGCATTCTATTGAAAATTCTCCTTCCCATCCTAATAAGGATGGTGAAGGCGATGATGGTAGTGGTGGTGGTGGCGGGAACAAGAATCGAGTTGCTGAATCGCTCTCAACGAATGGTAATTGA 1440 43.33 MEIDLSLKIDHHKQDWKQKTHQKDEQKQQQQQMGVDEAEIHDLANSGLQVFLPLNNIIDAEEISELQMEMDRMKEENKMLRKAVEQTMKDYYDLEMKIGIIQQNNLYKKNSHNFLSLHGNENKMPELEIGESVKKRRVRSPSKDTEMRESELGLSLGLHTNNDFEQDNNHRDIIQQEETREKNKEDLASNFNSLMQNKSQRTELQGMAPPQNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAATSFMLLDSLPNPQNPNILNSSSYSPTFFETLNSNEPSKGLAVDLTSNNFYASASGSVLAQPLNSTKTSGQYYSYYHRSFQPNLFSTPLDGRTWKPAENDKPSLTAESVSAIASDPKFRVAVAAAISSLMNKENSRTSMHSIENSPSHPNKDGEGDDGSGGGGGNKNRVAESLSTNGN 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3508628 3512342 - Sed0019636.1 Sed13g0515 734025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0515 479 FunFam probable WRKY transcription factor 31 213 290 - -
Sed13g0515 479 MobiDBLite consensus disorder prediction 1 26 - -
Sed13g0515 479 Pfam WRKY DNA -binding domain 229 287 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g0515 479 Coils Coil 63 90 - -
Sed13g0515 479 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 21 436 IPR044810 GO:0003700(InterPro)
Sed13g0515 479 MobiDBLite consensus disorder prediction 433 447 - -
Sed13g0515 479 MobiDBLite consensus disorder prediction 433 479 - -
Sed13g0515 479 Gene3D WRKY domain 213 290 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g0515 479 MobiDBLite consensus disorder prediction 1 35 - -
Sed13g0515 479 ProSiteProfiles WRKY domain profile. 223 289 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g0515 479 SMART WRKY_cls 228 288 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g0515 479 SUPERFAMILY WRKY DNA-binding domain 221 289 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0199 Sed-Chr8:1129753 Sed13g0515 Sed-Chr13:3508628 2.00E-40 dispersed
Sed08g2579 Sed-Chr8:38266746 Sed13g0515 Sed-Chr13:3508628 1.20E-41 dispersed
Sed13g0515 Sed-Chr13:3508628 Sed14g1331 Sed-Chr14:22164728 7.40E-37 dispersed
Sed13g0515 Sed-Chr13:3508628 Sed12g1936 Sed-Chr12:30465888 3.30E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40355 PF03106 WRKY 1.90E-24 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0515 - - - 0.0