Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0532 ATGAAGATTTTCGTCACCATTCTTCTCTGTTTGCTCTCTGTAACTTCAAGTTCCAGTTTAATCGCCAACCCCACTTGCCCAATGGACCTAAATTATGTACTCAGAATCCCATGGAATTCAACCGATTGCAGAAACCCTTATTTCAAATCCAACGCCAAAGCTTGTTGCCAAACCCTATTGTCCTTGTATGGAATCGCTTTGGCTCAACACCTCAAAGAAACCACCAATTTCAACCTCCCAAACCTAGAAACCTCCAGTTCTTGCCTTACCGATTACCAATCGAAGCTCTCGTCGCTCGCCCTTCCGAGCGAGCTCGTTTCGAGTTGCTTTGATCCTTTACAGTTTGTGATTTCTGATAATGTCTGTGCTGGTATTCAAACTACTCGAGATTGGGTCTCGAAGCTTGGCCCGACCTCGCCGCTCGATTTGGGGTGTCGATCGGATCTTGCTGGACCGACCTGTGATGCTTGTGTGGCTGCTGGATTCAAAGTTCAATCTATTTTGATTGGAATTGATGGTAATACATCTCATTCTATGGAGTGTTTTTACTTTGCTGTTCTTTATGCTGCTGGTATTGTTAATGAGTTTGGCCCTGAGGGTGGTAGTGCTTTAGGTTGCATTTTTAATTTACAATTGAGTGATGAACATTATTTGGAAAGTAAGCATCATGGTCTTGTTTATGGTCTTACTGCTGCTGCTGTTGGTGTTTTGATTGTTTTTTTTATATTGGGGATTTGCTTTTGGTATTATAAATGGAAAATTTTGGTTAAGAAGTCTGGTTTGGAGTTTGATGTGGAGTTGGATGAACAGGGGTCTAGACCACATGCTAGGCCTAATACTGGATCAATTTGGTTTAAGATTCATGAGCTTGAGAAGGCAACTGATAATTTTTCTTCAAAAAACTTCATTGGGAGAGGTGGGTTTGGTTTAGTTTACAAAGGGATGTTGACTGATGGAAGTATGGTGGCAGTCAAGAAAGTGATCGAATCCGATTTTCAGGGGAATGCAGAGTTTTGCAATGAAGTTGAAATCATCAGTAATTTGAAGCATAGGAATCTTGTTCCACTTAGAGGTTGTTGTGTGATTGATGAGGATGATGGTCACGATGAGCGAGGAAGTGAGCGATATCTTGTTTATGATTATATGCCGAATGGAAATCTTGATGATCATTTGTTTCTTTCACCATTTGATCAAGTTGAAACTGTGAAAAAGTCATTGACATGGCCTCAAAGGAAGAATATTATCTTGGATGTGGCGAAAGGCTTAGCTTATCTGCACTATGGAGTGAAACCGGCTATTTATCACAGAGATATCAAGGCTACGAACATATTGCTAGATGCAGATATGAGAGCGAGGGTGGCAGATTTTGGTCTTGCCAAACAGAGTAGGGAAGGACAGTCTCATCTAACAACTCGAGTTGCGGGAACTCATGGGTATCTAGCTCCCGAATACGCACTTTATGGACAACTAACTGAGAAGAGTGATGTTTATAGCTTTGGAGTAGTTGTTTTGGAGATAATGTGTGGGAGGAAAGCTCTTGATTTCTCTTTGCCATCATCGCCACGAGCGTTCCTGATCACAGATTGGGCTTGGTCCTTGGTTAAGGCCGGAAAAATAGGTGGTACTCTAGATCCTTCTCTGCTGAAATATGGAGATTCATCTAATTCAAATCCTAAAGCTATAATGGAGAGGTTTGTTGCAGTTGGAATTTTATGTTCTCATGTGATGGTTGCTTTAAGGCCTACCATTATGGATGCTCTGAAAATGTTGGAGGGTGACATTGAAGTTCCCCAACTTTCTGATCGGCCGGTGCCTTATGGTCATCCTTCATTTTCTGGCGATGGCAGCAACTTCAGTATATCGCCGAGACTGAGCGGGCCTCAACTGCATAGCGGCGACATGCTCAGATGA 1911 42.28 MKIFVTILLCLLSVTSSSSLIANPTCPMDLNYVLRIPWNSTDCRNPYFKSNAKACCQTLLSLYGIALAQHLKETTNFNLPNLETSSSCLTDYQSKLSSLALPSELVSSCFDPLQFVISDNVCAGIQTTRDWVSKLGPTSPLDLGCRSDLAGPTCDACVAAGFKVQSILIGIDGNTSHSMECFYFAVLYAAGIVNEFGPEGGSALGCIFNLQLSDEHYLESKHHGLVYGLTAAAVGVLIVFFILGICFWYYKWKILVKKSGLEFDVELDEQGSRPHARPNTGSIWFKIHELEKATDNFSSKNFIGRGGFGLVYKGMLTDGSMVAVKKVIESDFQGNAEFCNEVEIISNLKHRNLVPLRGCCVIDEDDGHDERGSERYLVYDYMPNGNLDDHLFLSPFDQVETVKKSLTWPQRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDFSLPSSPRAFLITDWAWSLVKAGKIGGTLDPSLLKYGDSSNSNPKAIMERFVAVGILCSHVMVALRPTIMDALKMLEGDIEVPQLSDRPVPYGHPSFSGDGSNFSISPRLSGPQLHSGDMLR 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3649746 3652610 + Sed0000789.1 Sed13g0532 734042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0532 636 FunFam probable receptor-like protein kinase At1g11050 259 381 - -
Sed13g0532 636 ProSitePatterns Protein kinases ATP-binding region signature. 303 326 IPR017441 GO:0005524(InterPro)
Sed13g0532 636 Pfam Protein kinase domain 299 512 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0532 636 MobiDBLite consensus disorder prediction 614 636 - -
Sed13g0532 636 PANTHER OS01G0750732 PROTEIN 43 600 IPR050885 -
Sed13g0532 636 SUPERFAMILY Protein kinase-like (PK-like) 275 591 IPR011009 -
Sed13g0532 636 SMART serkin_6 297 590 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0532 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0532 636 ProSiteProfiles Protein kinase domain profile. 297 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0532 636 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 382 598 - -
Sed13g0532 636 Pfam SPARK 23 182 IPR043891 -
Sed13g0532 636 Gene3D Transferase(Phosphotransferase) domain 1 382 600 - -
Sed13g0532 636 Gene3D Phosphorylase Kinase; domain 1 263 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0383 Sed-Chr7:2885759 Sed13g0532 Sed-Chr13:3649746 6.60E-99 dispersed
Sed09g1173 Sed-Chr9:35931512 Sed13g0532 Sed-Chr13:3649746 5.80E-95 dispersed
Sed13g0532 Sed-Chr13:3649746 Sed01g2180 Sed-Chr1:16437352 2.80E-68 dispersed
Sed13g0532 Sed-Chr13:3649746 Sed04g1607 Sed-Chr4:30858786 1.8e-312 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80073 PF00069 Pkinase 3.70E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0532 - - - 0.0