Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0533 ATGGAAATGAATTCCCCCAACTCGCTCGGGGTACCCGAGAAAGATGGCGGTGTAAAGAAGAAGGAGGAGAAGCTTGAGAGCTCGGACGACGACGACAGCGACATGCCGTTGTCGATGAGCCTAAGAGAGCTCTCAAAGGTTATACTTCCACCTTTGGGGGCTTCTAACTATAGTGATGACAGTAAAGTTAAGGGCAATACATGGATCATATCTCCTATGAGCTCAAGATACAGGTGGTGGCAGTCGTTCATGGTGGTTTTGGTTGCTTACTCGACCTGGGTTTACCCATTGGAACTGGCGTTCATGGATGCAATTTCTAAGCGGGAATTATTAATTGCAGACAATGTTGTCGATTTCTTCTTCGCCATTGACATCTTCTTCACCTTTTTTGTTGCTTACATTGACACTTGGACTCAGCTTCTCGTTCGTGATTCTAAGAAAATAGCCATCAGGTACTTGTCGACATGGTTCTTGATGGATTTGGCATCAACAATCCCATTTGAGACGATTAGATACCTTATTACTGGCAAATATGATGCTAGTCTCCCTTATGCTCTCCTGGGATTGCTCAGATTTTGGCGATTGCGACGTGGCAAGCAATTTTTTACCAGGCTTGAGAAGGACATTAGATTCAACTACTTTTGGGTTCGATGTGCTCGGCTTCTTTTTGTTACTTTGTTTTATGTCCATTGTGCCGGATGCTTCTACTATTTGTTGGCTGACCAATATCCAAATGAAGGACAGACCTGGATTGGAACCGCGGTTCCGAATTTTAAAGAGATAAGCCTTGGACAGAGATATGTTTCAGCCTTGTATTGGTCTATCACCACAATGACCACCGTTGGTTATGGTGATCTTCATGCTGTGAACACTGCAGAGATGATCTTCATCATTTTCTACATGCTCTTGAATCTTGGCTTAACTGCTTACTTGATCGGTAACATGACAAACTTAGTCGTTGAAGGAACTCGTCGCACCATGGAATTTAGAAACAACATCGAAATGGCTTCAAAATTCGTTAACCGAAACCACCTGCCTTCAAGGTTGAAGGAACATATATTGGCATATATGTGTTTGAGATTCAAGGCTGAAAGCCTGAACCAACAGCATTTGATCGAACAGCTTCCCAAGTCGATTTGCAAAAACATCTGTCAGCAATTGTTTATGCCAACTATGGAGAAAGTCTACCTTTTCAAGGGTGTGTCAAAGGAAACACTTATGCTGTTGGTAGCAAATATGAAAGCTGAGTATATACCTCCTAAGGAGGACGTGATCATACATAACGAAAGCCCGGATGAAGTTTATATCATCGTGTCTGGAGAAATCGAAATTATTGACTGCGACATGGAGGTGGAACGGATTGTTGGGACGTTACATAGTGGCAGTATGTTTGGAGAAGTAGGAGCACTTTATTGCAAAAACCAAACTTTTACATACAGAACCAAAACTCTTTCACAGCTCTTGAGGCTAAAAACAAGTGTACTACATCAAGCTATGCATGTCAGGCAAGAGGACAATAGGGTCATTGTCAATAACTTCTTTCAGGAAAGGAAACTCAGCCACAAAATCACCATAGAAGGTTCACCCGAAAAAGAGATCCCAGTGTTGAGTGAAGAAAAGGATCAAGGTTTCAACTGGAAACACTCCATTGAATTAGATTCTGCTAGAGTGAACATATACAAAGGCCATCCAGTAGCCAGAAAACAGGCTTCTTGTGATGATCCTGGAAAGCTAATCAGATTGCCACATTCAATGGAGGAGCTCAAAAAAGTTGCAGGTATAAAGTTTGGATTTGATGCAAGAAATGCTGTTTTGACAAATGAAGAAGGCTCTGAAATTGATTCCATTGATGTGATAAGGGATAATGATAAGCTCTTTTTTTCATAG 1887 41.71 MEMNSPNSLGVPEKDGGVKKKEEKLESSDDDDSDMPLSMSLRELSKVILPPLGASNYSDDSKVKGNTWIISPMSSRYRWWQSFMVVLVAYSTWVYPLELAFMDAISKRELLIADNVVDFFFAIDIFFTFFVAYIDTWTQLLVRDSKKIAIRYLSTWFLMDLASTIPFETIRYLITGKYDASLPYALLGLLRFWRLRRGKQFFTRLEKDIRFNYFWVRCARLLFVTLFYVHCAGCFYYLLADQYPNEGQTWIGTAVPNFKEISLGQRYVSALYWSITTMTTVGYGDLHAVNTAEMIFIIFYMLLNLGLTAYLIGNMTNLVVEGTRRTMEFRNNIEMASKFVNRNHLPSRLKEHILAYMCLRFKAESLNQQHLIEQLPKSICKNICQQLFMPTMEKVYLFKGVSKETLMLLVANMKAEYIPPKEDVIIHNESPDEVYIIVSGEIEIIDCDMEVERIVGTLHSGSMFGEVGALYCKNQTFTYRTKTLSQLLRLKTSVLHQAMHVRQEDNRVIVNNFFQERKLSHKITIEGSPEKEIPVLSEEKDQGFNWKHSIELDSARVNIYKGHPVARKQASCDDPGKLIRLPHSMEELKKVAGIKFGFDARNAVLTNEEGSEIDSIDVIRDNDKLFFS 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3669303 3682577 + Sed0004771.1 Sed13g0533 734043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0533 628 Pfam Ion transport protein 77 326 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed13g0533 628 ProSiteProfiles KHA domain profile. 556 628 IPR021789 -
Sed13g0533 628 ProSiteProfiles cAMP/cGMP binding motif profile. 397 516 IPR000595 -
Sed13g0533 628 MobiDBLite consensus disorder prediction 1 36 - -
Sed13g0533 628 SUPERFAMILY cAMP-binding domain-like 324 513 IPR018490 -
Sed13g0533 628 Gene3D - 79 320 - -
Sed13g0533 628 PANTHER POTASSIUM CHANNEL AKT1 35 524 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Sed13g0533 628 SUPERFAMILY Voltage-gated potassium channels 72 320 - -
Sed13g0533 628 Pfam KHA, dimerisation domain of potassium ion channel 556 627 IPR021789 -
Sed13g0533 628 Gene3D Jelly Rolls 364 532 IPR014710 -
Sed13g0533 628 SMART cnmp_10 397 514 IPR000595 -
Sed13g0533 628 PRINTS EAG/ELK/ERG potassium channel family signature 311 320 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed13g0533 628 PRINTS EAG/ELK/ERG potassium channel family signature 293 304 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed13g0533 628 PRINTS EAG/ELK/ERG potassium channel family signature 114 124 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed13g0533 628 PRINTS EAG/ELK/ERG potassium channel family signature 267 284 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed13g0533 628 FunFam Potassium channel KAT2 385 520 - -
Sed13g0533 628 Pfam Cyclic nucleotide-binding domain 421 499 IPR000595 -
Sed13g0533 628 FunFam Potassium channel KAT3 79 321 - -
Sed13g0533 628 CDD CAP_ED 397 500 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2387 Sed-Chr12:33723683 Sed13g0533 Sed-Chr13:3669303 4.80E-135 dispersed
Sed12g2388 Sed-Chr12:33723683 Sed13g0533 Sed-Chr13:3669303 6.30E-130 dispersed
Sed13g0533 Sed-Chr13:3669303 Sed04g1605 Sed-Chr4:30794336 4.00E-301 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0533 K21867 - csv:101205212 1034.63