Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0544 ATGGCTTCTCGTTTCTGGACCCAGGGTGGTAGCAGTGGTAGTGATTCTGAAGCGGAGGACAGTGATTTTGAAAAAGAGATTGGCGATCTACAGGCTGATAATAATGCCCAAACGGATAGAAGCAGATATCTGGTGGATGAGGATGACAGCGACGGTGACGATTCTGCTAATGATAAACGTACTGTCAAGTCGGCAAAAGATAAGCGTTTCGAGGAGATGTCTGCTACGGTGGATCAGATGAAAAATGCAATGAAAATCAATGACTGGGTAAGCCTGCAGGAGAGTTTTGATAAAATTAATAAGCAGCTTGAGAAAGTCATGCGTGTTACCGAGTCTGAGAAGGTGCCAGCTCTGTATATTAAAGCACTTGTGATGTTAGAGGATTTCCTGAATGAAGCCATGGCTAATAAGGAAGCAAAGAAGAAAATGAGTACTAGCAATGCTAAGGCCTTGAATTCAATGAAACAGAAGCTGAAGAAGAACAATAAACAATATGAAGAGTTAATTACTAAGTGCAGGGAGAATCCTGAGGTTGAGGAAGAAAAGGAAGAGGATGAGGAGACAGAGGATGATGACGACGACGATGATGATTCTGTAATTGAAGAGGATCCTACTAAAATTATGTCGGGATCAGAAGATGAAGAGGACGAGGAAGAAGACCAAGAATCAGGGCCTGATGGTGGTTGGACGAAAAAGTTGAGCAAAAAAGATAAGCTCATGGATAAGCAGTTTATGAAGGATCCTAGTGAGATTACGTGGGACACTGTTAACAAAAAATTTAAGGAGGTTGTGGCTGCTCGGGGTAGGAAAGGAACTGGAAGATTTGAGCAAGTTGAACAGCTTACATTCTTAACAAAAGTTGCTAAGACCCCTGCACAGAAGCTTGAGATTTTGTTCAGTGTTATATCTGCCCAGTTTGATGTTAATCCAGGTCTCAGTGGGCACATGCCTATCAGTGTGTGGAAGAAGTGTGTGCACAATATGCTTTCTATAATTGATATTCTTGTGCAAAATTCTAACATTGTGGTGGATGACATGGTTGAGCCTGATGAGAATGAGAGCCAGAAGCCAGCAGACTATAAGGGCACTATACGTGTTTGGGGAAACTTGGTCGCGTTTGTTGAGAGAATTGACACCGAGTTTTTTAAGAGTTTGCAGTGTATTGATCCACATACACGCGAGTATGTTGAAAGACTCAGAGATGAGCCAATGTTTATGGTTCTTGCTCAGAATGTCCAAGAATATTTGGAACGAATTGGGGATAACAAAGCAGCTTCGAAAGTTGCCTTAAGGCGTGTGGAGCAGATCTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAGCTGGCAGAGCTGTCCGAAGATGGAGATAGTGGAGATGCAAGTGAAGAGGCTAAAGTTGTAGAAGAGACCAGGGGACCCGCTCCATTTATTTTCACACCAGAGCTTGTACCTCGCAAGCCAGTCTTTCCAGAGAGTAGTAGAGCTTTTATGGATATTCTGGTGACCTATATATACCAATATGGAGATGAGCGTACTAAAGCACGAGCTATGCTCTGTGATATTTACCACCATGCACTCTTGGATGAATTTTATATTTCGAGTGACTTGTTACTGATGAGTCACTTACAGGATAGTGTCCAACACTTGGACATTTCAACACAGATCCTTTTCAATAGGGCAATGGCTCAACTTGGTCTATGTGGATTTAGGGTTGGCTTGATTAGTGAAGGACATGGCTGCCTTTCAGAATTATATTCTGGTGGGAGGGTGAAGGAATTGCTTGCTCAAGGTGTCTCACAAAGCCGATATCATGAAAAGACTCCAGAACAGGAAAGGCTTGAAAGAAGAAGGCAGATGCCATACCACATGCACATAAATCTTGAGCTCCTGGAGGCTGTGCATTTAATATGTGCAATGCTGCTAGAAGTTCCCAACATGGCAGGCAATGTTCATGATGCAAAGCACAGGGTTATTAGCAAGAACTTTAGAAGGTTACTTGATGTGAGTGACAGACAAACATTCACCGGTCCTCCTGAGAGCGTCCGAGACCATGTGATGGCTGCTACCCGGGCCCTTCGCAAGGGCGATTTCCAGAAGGCTTTTGATGTTATTGCTTCTCTTGATGTATGGAAGCTACTTAGGAATCGTGGTGATGTGCTGGAAATGGTTAAAGGAAAGATTAAGGAAGAAGCTCTGAGGACTTACCTCCTCACGTACTCTTCCTCTTATGATTCTCTGAGCTTGGACCATCTGACCCAAATGTTTGACCTCGCTGAGGGTCAAACTCACTGTTTTGTTAGCAAGATGATGATAAATGAGGAACTCCATGCAAGTTGGGATCAGCCAAGCCGGTGTGTCGTCTTCCATGATGTTACGCACACCCGGTTACAGGGCCTGGCCTTCGAGTTGGCAGATAAGCTATCAATCCTAGCTGAAACTAATGAGAGGGCAGCAGAGGCAAGAATAGGAGGAGGATTAGATTTACCGATGAGGCGGAGAGACAACCAAGAATATGCTGGTGGGGCTGTAGGTGGTGGGGGTAGCAGGTGGCCGGACAACATGTCTTATAACCAAGGAAGGCCTGGTAGTTCGCGTGCAGGATATAGCAGTGGAGGGCGAGGCCAAGGTGGCGGCGGTGGATATTCTAGAGATCGGATGGGTCAGTCACGAGGAGGCAATGCAGGATACCAAAGCTCCCGTTATCAAGATGCTGCCTATGGATCGGGGAGGACTGCATATCAGTCTGGTTCTGTTGGAGGATCTCATATGGATGCTTCAGCTCGCATGGTCAGTCTCAAAAAAGGCGTTCGCGCTTAA 2823 44.88 MASRFWTQGGSSGSDSEAEDSDFEKEIGDLQADNNAQTDRSRYLVDEDDSDGDDSANDKRTVKSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPALYIKALVMLEDFLNEAMANKEAKKKMSTSNAKALNSMKQKLKKNNKQYEELITKCRENPEVEEEKEEDEETEDDDDDDDDSVIEEDPTKIMSGSEDEEDEEEDQESGPDGGWTKKLSKKDKLMDKQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVISAQFDVNPGLSGHMPISVWKKCVHNMLSIIDILVQNSNIVVDDMVEPDENESQKPADYKGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQEYLERIGDNKAASKVALRRVEQIYYKPQEVYDAMRKLAELSEDGDSGDASEEAKVVEETRGPAPFIFTPELVPRKPVFPESSRAFMDILVTYIYQYGDERTKARAMLCDIYHHALLDEFYISSDLLLMSHLQDSVQHLDISTQILFNRAMAQLGLCGFRVGLISEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAGNVHDAKHRVISKNFRRLLDVSDRQTFTGPPESVRDHVMAATRALRKGDFQKAFDVIASLDVWKLLRNRGDVLEMVKGKIKEEALRTYLLTYSSSYDSLSLDHLTQMFDLAEGQTHCFVSKMMINEELHASWDQPSRCVVFHDVTHTRLQGLAFELADKLSILAETNERAAEARIGGGLDLPMRRRDNQEYAGGAVGGGGSRWPDNMSYNQGRPGSSRAGYSSGGRGQGGGGGYSRDRMGQSRGGNAGYQSSRYQDAAYGSGRTAYQSGSVGGSHMDASARMVSLKKGVRA 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3756545 3761696 + Sed0017291.1 Sed13g0544 734054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0544 940 MobiDBLite consensus disorder prediction 839 926 - -
Sed13g0544 940 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 883 IPR027516 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Sed13g0544 940 MobiDBLite consensus disorder prediction 1 16 - -
Sed13g0544 940 MobiDBLite consensus disorder prediction 853 872 - -
Sed13g0544 940 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 724 812 IPR000717 -
Sed13g0544 940 SUPERFAMILY Winged helix DNA-binding domain 726 794 IPR036390 -
Sed13g0544 940 MobiDBLite consensus disorder prediction 208 223 - -
Sed13g0544 940 MobiDBLite consensus disorder prediction 140 234 - -
Sed13g0544 940 Coils Coil 148 175 - -
Sed13g0544 940 MobiDBLite consensus disorder prediction 179 201 - -
Sed13g0544 940 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 46 655 IPR008905 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Sed13g0544 940 ProSiteProfiles PCI domain profile. 623 795 IPR000717 -
Sed13g0544 940 MobiDBLite consensus disorder prediction 159 178 - -
Sed13g0544 940 MobiDBLite consensus disorder prediction 893 923 - -
Sed13g0544 940 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 892 IPR027516 GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(PANTHER)|GO:0006413(InterPro)|GO:0031369(InterPro)|GO:0031369(PANTHER)
Sed13g0544 940 MobiDBLite consensus disorder prediction 1 67 - -
Sed13g0544 940 Pfam PCI domain 721 792 IPR000717 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0544 Sed-Chr13:3756545 Sed04g1596 Sed-Chr4:30729433 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0544 K03252 - csv:101203990 1499.57