Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g0544 | ATGGCTTCTCGTTTCTGGACCCAGGGTGGTAGCAGTGGTAGTGATTCTGAAGCGGAGGACAGTGATTTTGAAAAAGAGATTGGCGATCTACAGGCTGATAATAATGCCCAAACGGATAGAAGCAGATATCTGGTGGATGAGGATGACAGCGACGGTGACGATTCTGCTAATGATAAACGTACTGTCAAGTCGGCAAAAGATAAGCGTTTCGAGGAGATGTCTGCTACGGTGGATCAGATGAAAAATGCAATGAAAATCAATGACTGGGTAAGCCTGCAGGAGAGTTTTGATAAAATTAATAAGCAGCTTGAGAAAGTCATGCGTGTTACCGAGTCTGAGAAGGTGCCAGCTCTGTATATTAAAGCACTTGTGATGTTAGAGGATTTCCTGAATGAAGCCATGGCTAATAAGGAAGCAAAGAAGAAAATGAGTACTAGCAATGCTAAGGCCTTGAATTCAATGAAACAGAAGCTGAAGAAGAACAATAAACAATATGAAGAGTTAATTACTAAGTGCAGGGAGAATCCTGAGGTTGAGGAAGAAAAGGAAGAGGATGAGGAGACAGAGGATGATGACGACGACGATGATGATTCTGTAATTGAAGAGGATCCTACTAAAATTATGTCGGGATCAGAAGATGAAGAGGACGAGGAAGAAGACCAAGAATCAGGGCCTGATGGTGGTTGGACGAAAAAGTTGAGCAAAAAAGATAAGCTCATGGATAAGCAGTTTATGAAGGATCCTAGTGAGATTACGTGGGACACTGTTAACAAAAAATTTAAGGAGGTTGTGGCTGCTCGGGGTAGGAAAGGAACTGGAAGATTTGAGCAAGTTGAACAGCTTACATTCTTAACAAAAGTTGCTAAGACCCCTGCACAGAAGCTTGAGATTTTGTTCAGTGTTATATCTGCCCAGTTTGATGTTAATCCAGGTCTCAGTGGGCACATGCCTATCAGTGTGTGGAAGAAGTGTGTGCACAATATGCTTTCTATAATTGATATTCTTGTGCAAAATTCTAACATTGTGGTGGATGACATGGTTGAGCCTGATGAGAATGAGAGCCAGAAGCCAGCAGACTATAAGGGCACTATACGTGTTTGGGGAAACTTGGTCGCGTTTGTTGAGAGAATTGACACCGAGTTTTTTAAGAGTTTGCAGTGTATTGATCCACATACACGCGAGTATGTTGAAAGACTCAGAGATGAGCCAATGTTTATGGTTCTTGCTCAGAATGTCCAAGAATATTTGGAACGAATTGGGGATAACAAAGCAGCTTCGAAAGTTGCCTTAAGGCGTGTGGAGCAGATCTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAGCTGGCAGAGCTGTCCGAAGATGGAGATAGTGGAGATGCAAGTGAAGAGGCTAAAGTTGTAGAAGAGACCAGGGGACCCGCTCCATTTATTTTCACACCAGAGCTTGTACCTCGCAAGCCAGTCTTTCCAGAGAGTAGTAGAGCTTTTATGGATATTCTGGTGACCTATATATACCAATATGGAGATGAGCGTACTAAAGCACGAGCTATGCTCTGTGATATTTACCACCATGCACTCTTGGATGAATTTTATATTTCGAGTGACTTGTTACTGATGAGTCACTTACAGGATAGTGTCCAACACTTGGACATTTCAACACAGATCCTTTTCAATAGGGCAATGGCTCAACTTGGTCTATGTGGATTTAGGGTTGGCTTGATTAGTGAAGGACATGGCTGCCTTTCAGAATTATATTCTGGTGGGAGGGTGAAGGAATTGCTTGCTCAAGGTGTCTCACAAAGCCGATATCATGAAAAGACTCCAGAACAGGAAAGGCTTGAAAGAAGAAGGCAGATGCCATACCACATGCACATAAATCTTGAGCTCCTGGAGGCTGTGCATTTAATATGTGCAATGCTGCTAGAAGTTCCCAACATGGCAGGCAATGTTCATGATGCAAAGCACAGGGTTATTAGCAAGAACTTTAGAAGGTTACTTGATGTGAGTGACAGACAAACATTCACCGGTCCTCCTGAGAGCGTCCGAGACCATGTGATGGCTGCTACCCGGGCCCTTCGCAAGGGCGATTTCCAGAAGGCTTTTGATGTTATTGCTTCTCTTGATGTATGGAAGCTACTTAGGAATCGTGGTGATGTGCTGGAAATGGTTAAAGGAAAGATTAAGGAAGAAGCTCTGAGGACTTACCTCCTCACGTACTCTTCCTCTTATGATTCTCTGAGCTTGGACCATCTGACCCAAATGTTTGACCTCGCTGAGGGTCAAACTCACTGTTTTGTTAGCAAGATGATGATAAATGAGGAACTCCATGCAAGTTGGGATCAGCCAAGCCGGTGTGTCGTCTTCCATGATGTTACGCACACCCGGTTACAGGGCCTGGCCTTCGAGTTGGCAGATAAGCTATCAATCCTAGCTGAAACTAATGAGAGGGCAGCAGAGGCAAGAATAGGAGGAGGATTAGATTTACCGATGAGGCGGAGAGACAACCAAGAATATGCTGGTGGGGCTGTAGGTGGTGGGGGTAGCAGGTGGCCGGACAACATGTCTTATAACCAAGGAAGGCCTGGTAGTTCGCGTGCAGGATATAGCAGTGGAGGGCGAGGCCAAGGTGGCGGCGGTGGATATTCTAGAGATCGGATGGGTCAGTCACGAGGAGGCAATGCAGGATACCAAAGCTCCCGTTATCAAGATGCTGCCTATGGATCGGGGAGGACTGCATATCAGTCTGGTTCTGTTGGAGGATCTCATATGGATGCTTCAGCTCGCATGGTCAGTCTCAAAAAAGGCGTTCGCGCTTAA | 2823 | 44.88 | MASRFWTQGGSSGSDSEAEDSDFEKEIGDLQADNNAQTDRSRYLVDEDDSDGDDSANDKRTVKSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPALYIKALVMLEDFLNEAMANKEAKKKMSTSNAKALNSMKQKLKKNNKQYEELITKCRENPEVEEEKEEDEETEDDDDDDDDSVIEEDPTKIMSGSEDEEDEEEDQESGPDGGWTKKLSKKDKLMDKQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVISAQFDVNPGLSGHMPISVWKKCVHNMLSIIDILVQNSNIVVDDMVEPDENESQKPADYKGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQEYLERIGDNKAASKVALRRVEQIYYKPQEVYDAMRKLAELSEDGDSGDASEEAKVVEETRGPAPFIFTPELVPRKPVFPESSRAFMDILVTYIYQYGDERTKARAMLCDIYHHALLDEFYISSDLLLMSHLQDSVQHLDISTQILFNRAMAQLGLCGFRVGLISEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAGNVHDAKHRVISKNFRRLLDVSDRQTFTGPPESVRDHVMAATRALRKGDFQKAFDVIASLDVWKLLRNRGDVLEMVKGKIKEEALRTYLLTYSSSYDSLSLDHLTQMFDLAEGQTHCFVSKMMINEELHASWDQPSRCVVFHDVTHTRLQGLAFELADKLSILAETNERAAEARIGGGLDLPMRRRDNQEYAGGAVGGGGSRWPDNMSYNQGRPGSSRAGYSSGGRGQGGGGGYSRDRMGQSRGGNAGYQSSRYQDAAYGSGRTAYQSGSVGGSHMDASARMVSLKKGVRA | 940 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 3756545 | 3761696 | + | Sed0017291.1 | Sed13g0544 | 734054 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g0544 | 940 | MobiDBLite | consensus disorder prediction | 839 | 926 | - | - | |
Sed13g0544 | 940 | Hamap | Eukaryotic translation initiation factor 3 subunit C [EIF3C]. | 2 | 883 | IPR027516 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Sed13g0544 | 940 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Sed13g0544 | 940 | MobiDBLite | consensus disorder prediction | 853 | 872 | - | - | |
Sed13g0544 | 940 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 724 | 812 | IPR000717 | - | |
Sed13g0544 | 940 | SUPERFAMILY | Winged helix DNA-binding domain | 726 | 794 | IPR036390 | - | |
Sed13g0544 | 940 | MobiDBLite | consensus disorder prediction | 208 | 223 | - | - | |
Sed13g0544 | 940 | MobiDBLite | consensus disorder prediction | 140 | 234 | - | - | |
Sed13g0544 | 940 | Coils | Coil | 148 | 175 | - | - | |
Sed13g0544 | 940 | MobiDBLite | consensus disorder prediction | 179 | 201 | - | - | |
Sed13g0544 | 940 | Pfam | Eukaryotic translation initiation factor 3 subunit 8 N-terminus | 46 | 655 | IPR008905 | GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Sed13g0544 | 940 | ProSiteProfiles | PCI domain profile. | 623 | 795 | IPR000717 | - | |
Sed13g0544 | 940 | MobiDBLite | consensus disorder prediction | 159 | 178 | - | - | |
Sed13g0544 | 940 | MobiDBLite | consensus disorder prediction | 893 | 923 | - | - | |
Sed13g0544 | 940 | PANTHER | EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED | 1 | 892 | IPR027516 | GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(PANTHER)|GO:0006413(InterPro)|GO:0031369(InterPro)|GO:0031369(PANTHER) | |
Sed13g0544 | 940 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
Sed13g0544 | 940 | Pfam | PCI domain | 721 | 792 | IPR000717 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed13g0544 | Sed-Chr13:3756545 | Sed04g1596 | Sed-Chr4:30729433 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g0544 | K03252 | - | csv:101203990 | 1499.57 |