Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0547 ATGGGCAAAGGGCCATTTTCTTTTCGCCGGAGTAGTAGTCGTCGCCGCCCTAAGAAGGCGGTTCAGTCATCGCCGTTATCATCACCTCCGCCACCTTTACCGAGTTCTCCTCCCATTAACAATAATGGCAGCGGTTTGGTCAGTGGTGGTGGTGGGGCTGTGGGAAAGGTGAAGAAGAAGGCTGGAGGAGCGAGGCTGTGGATGCGTCTCGACAGGATGGGGCAGTCGGAGCTTGTAGAGTTGGACAAGAGCGCTATAATCCAGCGTACTGCAATTCCGACTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCCCATTCCTCTAACATACTCGCCAGGGAAAAGGCCATGGTTGTTAATTTAGAGTTCATAAAAGCTATAGTTACTGCCGAAGAAGTCCTACTACTTGACCCTCTTCGCCAAGAAGTTATTCCATTTGTGGATCAGCTAAGGAAGCTACTTGCTAAGAAGAGTTCATCTCAGGGCCATGAAGATGGAGCTGTAGATGAACGTGAAAATTACGTGAACGCATCGAGAGGAGGAAAGTGGTTGCCTGTTTCCGAAGCGGCTGAAGGTGTTCAGTATGAGCTCCCATTTGAGTTTCAGGTTCTGGAAAATGGGTTGGAGGTTGTGTGCATGTACTTGGATTCTAATGTGACAGACCTTGAGAGAGATGCTTATCCAGTTCTGGATGAACTAGCTCGGAATGTTAGTACCAAGAATCTAGAACGTGTGAGGAGCTTGAAAAGTAATCTTACCCGTATCCTTGCACGTGTTCAGAAGGTGCGGGACGAGATCGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTAACAAGGAAATGGATGCAGAATCAACAATCCGATGCTTTGCTGGGAGGTCTGGCTTCCAACAGCACCACTGACATTGTTCCCCATCTTCGTCGACTTAGTTCCACATGTAGCGGAAGTGTGGTGACAAACAATCTCTTGGATGATAATGATGTAGAGGATCTGGAGATGATGCTCGAGGCATATTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTAAGGGAATACATCGATGACACCGAGGATTACGTCAATATTCAACTTGACAATCAACGAAATGAACTCATTCAGTTTCAGTTGACACTGACCATTGCTTCATTTGCCATAGCCGTTGAAACCTTAATCGCAGGATTGTTTGGCATGAACATCCCTTGTAAATTGTACGAGACGGATGGGGTATTCGGGTACTTTGTCGGAGGTAGTTCAGCAGGATCTATGTTGATTTTCTTGCTTATTTTCGGGTATGCAAGATGGAAGAAACTTCTTGGTTCATGA 1344 45.76 MGKGPFSFRRSSSRRRPKKAVQSSPLSSPPPPLPSSPPINNNGSGLVSGGGGAVGKVKKKAGGARLWMRLDRMGQSELVELDKSAIIQRTAIPTRDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKKSSSQGHEDGAVDERENYVNASRGGKWLPVSEAAEGVQYELPFEFQVLENGLEVVCMYLDSNVTDLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQSDALLGGLASNSTTDIVPHLRRLSSTCSGSVVTNNLLDDNDVEDLEMMLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCKLYETDGVFGYFVGGSSAGSMLIFLLIFGYARWKKLLGS 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3768900 3775454 + Sed0026970.1 Sed13g0547 734057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0547 447 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 51 444 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Sed13g0547 447 Gene3D - 54 138 - -
Sed13g0547 447 CDD Mrs2_Mfm1p-like 67 444 IPR039204 -
Sed13g0547 447 Coils Coil 245 279 - -
Sed13g0547 447 MobiDBLite consensus disorder prediction 1 54 - -
Sed13g0547 447 Gene3D Magnesium transport protein CorA, transmembrane region 140 378 - -
Sed13g0547 447 Gene3D Magnesium transport protein CorA, transmembrane region 385 445 - -
Sed13g0547 447 FunFam Magnesium transporter MRS2-1 55 138 - -
Sed13g0547 447 Pfam Magnesium transporter MRS2-like 79 290 - -
Sed13g0547 447 MobiDBLite consensus disorder prediction 24 38 - -
Sed13g0547 447 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 383 429 IPR045863 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0722 Sed-Chr9:11925834 Sed13g0547 Sed-Chr13:3768900 1.40E-78 dispersed
Sed10g1946 Sed-Chr10:36189412 Sed13g0547 Sed-Chr13:3768900 2.00E-74 dispersed
Sed13g0547 Sed-Chr13:3768900 Sed13g0549 Sed-Chr13:3768900 6.20E-187 dispersed
Sed13g0547 Sed-Chr13:3768900 Sed13g0548 Sed-Chr13:3768900 1.20E-169 tandem
Sed13g0547 Sed-Chr13:3768900 Sed04g1594 Sed-Chr4:30704261 6.80E-194 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0547 K16075 - csv:101203496 676.396