Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0548 ATGGGCAAAGGGCCATTTTCTTTTCGCCGGAGTAGTAGTCGTCGCCGCCCTAAGAAGGCGGTTCAGTCATCGCCGTTATCATCACCTCCGCCACCTTTACCGAGTTCTCCTCCCATTAACAATAATGGCAGCGGTTTGGTCAGTGGTGGTGGTGGGGCTGTGGGAAAGGTGAAGAAGAAGGCTGGAGGAGCGAGGCTGTGGATGCGTCTCGACAGGATGGGGCAGTCGGAGCTTGTAGAGTTGGACAAGAGCGCTATAATCCAGCGTACTGCAATTCCGACTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCCCATTCCTCTAACATACTCGCCAGGGAAAAGGCCATGGTTGTTAATTTAGAGTTCATAAAAGCTATAGTTACTGCCGAAGAAGTCCTACTACTTGACCCTCTTCGCCAAGAAGTTATTCCATTTGTGGATCAGCTAAGGAAGCTACTTGCTAAGAAGAGTTCATCTCAGGGCCATGAAGATGGAGCTGTAGATGAACGTGAAAATTACGTGAACGCATCGAGAGGAGGAAAGTGGTTGCCTGTTTCCGAAGCGGCTGAAGGTGTTCAGTATGAGCTCCCATTTGAGTTTCAGGTTCTGGAAAATGGGTTGGAGGTTGTGTGCATGTACTTGGATTCTAATGTGACAGACCTTGAGAGAGATGCTTATCCAGTTCTGGATGAACTAGCTCGGAATGTTAGTACCAAGAATCTAGAACGTGTGAGGAGCTTGAAAAGTAATCTTACCCGTATCCTTGCACGTGTTCAGAAGGTGCGGGACGAGATCGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTAACAAGGAAATGGATGCAGAATCAACAATCCGATGCTTTGCTGGGAGGTCTGGCTTCCAACAGCACCACTGACATTGTTCCCCATCTTCGTCGACTTAGTTCCACATGTAGCGGAAGTGTGGTGACAAACAATCTCTTGGATGATAATGATGTAGAGGATCTGGAGATGATGCTCGAGGCATATTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTGAGAGATAAGTTTCTTCATTACATCATGATTAAGTTCTATTATCAGGCAACAACAGGAATAACTCTCTTTTATTTTATTTTGTTTGGGTGCATAGATGCAAGCCGACCCCGCTGCTCACAAAAACTTTGTTTAAAAACATCACCAATGACTATTATTTGTCTCTATAGTTGTATCATAATCAAATGTGTAAAACCCTAG 1266 44.79 MGKGPFSFRRSSSRRRPKKAVQSSPLSSPPPPLPSSPPINNNGSGLVSGGGGAVGKVKKKAGGARLWMRLDRMGQSELVELDKSAIIQRTAIPTRDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKKSSSQGHEDGAVDERENYVNASRGGKWLPVSEAAEGVQYELPFEFQVLENGLEVVCMYLDSNVTDLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQSDALLGGLASNSTTDIVPHLRRLSSTCSGSVVTNNLLDDNDVEDLEMMLEAYFMQLDGTRNRILSVRDKFLHYIMIKFYYQATTGITLFYFILFGCIDASRPRCSQKLCLKTSPMTIICLYSCIIIKCVKP 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3768900 3774535 + Sed0026970.2 Sed13g0548 734058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0548 421 CDD Mrs2_Mfm1p-like 67 358 IPR039204 -
Sed13g0548 421 Pfam Magnesium transporter MRS2-like 79 348 - -
Sed13g0548 421 Gene3D Magnesium transport protein CorA, transmembrane region 139 368 - -
Sed13g0548 421 Gene3D - 54 138 - -
Sed13g0548 421 Coils Coil 245 279 - -
Sed13g0548 421 MobiDBLite consensus disorder prediction 1 54 - -
Sed13g0548 421 MobiDBLite consensus disorder prediction 24 38 - -
Sed13g0548 421 FunFam Magnesium transporter MRS2-1 55 138 - -
Sed13g0548 421 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 51 359 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0548 K16075 - - csv:101203496 513.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0548 Sed-Chr13:3768900 Sed13g0550 Sed-Chr13:3768900 6.20E-173 dispersed
Sed13g0547 Sed-Chr13:3768900 Sed13g0548 Sed-Chr13:3768900 1.20E-169 tandem
Sed13g0548 Sed-Chr13:3768900 Sed13g0549 Sed-Chr13:3768900 1.50E-134 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed06g2048 . 1 447 MRS2 Gene Family AT1G16010 83.4 1.6e-203 706.4
Sed05g1392 . 1 446 MRS2 Gene Family AT1G16010 82.3 8.2e-200 694.1
Sed03g2573 . 6 380 MRS2 Gene Family AT1G16010 53.1 8.7e-109 391.7
Sed04g1953 . 1 366 MRS2 Gene Family AT5G64560 80.2 1.3e-156 550.4
Sed09g0722 . 1 361 MRS2 Gene Family AT5G64560 79.6 1.3e-156 550.4
Sed05g0080 . 1 364 MRS2 Gene Family AT5G64560 70.2 1.4e-131 467.2
Sed05g2636 . 21 495 MRS2 Gene Family AT3G19640 66.5 1.3e-158 557.4
Sed10g1946 . 39 494 MRS2 Gene Family AT3G19640 66.7 5.7e-154 542.0
Sed04g1594 . 3 446 MRS2 Gene Family AT3G58970 65.8 1.4e-146 517.3
Sed13g0547 . 55 447 MRS2 Gene Family AT3G58970 68.0 2.7e-139 493.0
Sed13g0549 . 24 359 MRS2 Gene Family AT3G58970 66.8 2.6e-113 406.8
Sed13g0548 . 55 358 MRS2 Gene Family AT3G58970 65.3 7.3e-100 362.1
Sed13g0550 . 24 270 MRS2 Gene Family AT3G58970 62.9 6.9e-74 275.8
Sed03g2573 . 6 380 MRS2 Gene Family AT2G03620 67.9 5.7e-134 475.3
Sed06g2048 . 13 447 MRS2 Gene Family AT2G03620 53.0 5.6e-113 405.6
Sed05g1392 . 11 446 MRS2 Gene Family AT2G03620 53.4 3.6e-112 402.9
Sed04g1953 . 1 328 MRS2 Gene Family AT5G09690 74.7 4.4e-126 448.7
Sed09g0722 . 1 323 MRS2 Gene Family AT5G09690 73.2 3.8e-122 435.6
Sed05g0080 . 1 326 MRS2 Gene Family AT5G09690 65.7 4.1e-108 389.0
Sed05g1392 . 40 382 MRS2 Gene Family AT5G09690 51.3 2.6e-78 290.0
Sed04g1953 . 12 288 MRS2 Gene Family AT5G09720 65.5 4.3e-88 322.4
Sed09g0722 . 1 283 MRS2 Gene Family AT5G09720 64.2 7.4e-88 321.6
Sed05g0080 . 11 286 MRS2 Gene Family AT5G09720 56.9 6.7e-73 271.9
Sed06g2048 . 1 447 MRS2 Gene Family AT1G80900 82.1 1.2e-198 690.3
Sed05g1392 . 1 446 MRS2 Gene Family AT1G80900 81.4 5.5e-196 681.4
Sed03g2573 . 6 380 MRS2 Gene Family AT1G80900 53.0 4.8e-107 386.0
Sed03g1863 . 105 444 MRS2 Gene Family AT5G22830 83.2 3.4e-156 549.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47