Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0548 ATGGGCAAAGGGCCATTTTCTTTTCGCCGGAGTAGTAGTCGTCGCCGCCCTAAGAAGGCGGTTCAGTCATCGCCGTTATCATCACCTCCGCCACCTTTACCGAGTTCTCCTCCCATTAACAATAATGGCAGCGGTTTGGTCAGTGGTGGTGGTGGGGCTGTGGGAAAGGTGAAGAAGAAGGCTGGAGGAGCGAGGCTGTGGATGCGTCTCGACAGGATGGGGCAGTCGGAGCTTGTAGAGTTGGACAAGAGCGCTATAATCCAGCGTACTGCAATTCCGACTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCCCATTCCTCTAACATACTCGCCAGGGAAAAGGCCATGGTTGTTAATTTAGAGTTCATAAAAGCTATAGTTACTGCCGAAGAAGTCCTACTACTTGACCCTCTTCGCCAAGAAGTTATTCCATTTGTGGATCAGCTAAGGAAGCTACTTGCTAAGAAGAGTTCATCTCAGGGCCATGAAGATGGAGCTGTAGATGAACGTGAAAATTACGTGAACGCATCGAGAGGAGGAAAGTGGTTGCCTGTTTCCGAAGCGGCTGAAGGTGTTCAGTATGAGCTCCCATTTGAGTTTCAGGTTCTGGAAAATGGGTTGGAGGTTGTGTGCATGTACTTGGATTCTAATGTGACAGACCTTGAGAGAGATGCTTATCCAGTTCTGGATGAACTAGCTCGGAATGTTAGTACCAAGAATCTAGAACGTGTGAGGAGCTTGAAAAGTAATCTTACCCGTATCCTTGCACGTGTTCAGAAGGTGCGGGACGAGATCGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTAACAAGGAAATGGATGCAGAATCAACAATCCGATGCTTTGCTGGGAGGTCTGGCTTCCAACAGCACCACTGACATTGTTCCCCATCTTCGTCGACTTAGTTCCACATGTAGCGGAAGTGTGGTGACAAACAATCTCTTGGATGATAATGATGTAGAGGATCTGGAGATGATGCTCGAGGCATATTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTGAGAGATAAGTTTCTTCATTACATCATGATTAAGTTCTATTATCAGGCAACAACAGGAATAACTCTCTTTTATTTTATTTTGTTTGGGTGCATAGATGCAAGCCGACCCCGCTGCTCACAAAAACTTTGTTTAAAAACATCACCAATGACTATTATTTGTCTCTATAGTTGTATCATAATCAAATGTGTAAAACCCTAG 1266 44.79 MGKGPFSFRRSSSRRRPKKAVQSSPLSSPPPPLPSSPPINNNGSGLVSGGGGAVGKVKKKAGGARLWMRLDRMGQSELVELDKSAIIQRTAIPTRDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKKSSSQGHEDGAVDERENYVNASRGGKWLPVSEAAEGVQYELPFEFQVLENGLEVVCMYLDSNVTDLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQSDALLGGLASNSTTDIVPHLRRLSSTCSGSVVTNNLLDDNDVEDLEMMLEAYFMQLDGTRNRILSVRDKFLHYIMIKFYYQATTGITLFYFILFGCIDASRPRCSQKLCLKTSPMTIICLYSCIIIKCVKP 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3768900 3774535 + Sed0026970.2 Sed13g0548 734058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0548 421 CDD Mrs2_Mfm1p-like 67 358 IPR039204 -
Sed13g0548 421 Pfam Magnesium transporter MRS2-like 79 348 - -
Sed13g0548 421 Gene3D Magnesium transport protein CorA, transmembrane region 139 368 - -
Sed13g0548 421 Gene3D - 54 138 - -
Sed13g0548 421 Coils Coil 245 279 - -
Sed13g0548 421 MobiDBLite consensus disorder prediction 1 54 - -
Sed13g0548 421 MobiDBLite consensus disorder prediction 24 38 - -
Sed13g0548 421 FunFam Magnesium transporter MRS2-1 55 138 - -
Sed13g0548 421 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 51 359 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0548 Sed-Chr13:3768900 Sed13g0550 Sed-Chr13:3768900 6.20E-173 dispersed
Sed13g0547 Sed-Chr13:3768900 Sed13g0548 Sed-Chr13:3768900 1.20E-169 tandem
Sed13g0548 Sed-Chr13:3768900 Sed13g0549 Sed-Chr13:3768900 1.50E-134 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0548 K16075 - csv:101203496 513.842