Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0549 ATGAAATTGTTTCTTATCCAAAAAAAGAAATCTAGAATTCCGTTTGGAGTTATCGTTGTTATTCTCGCAGCCAGGGAAAAGGCCATGGTTGTTAATTTAGAGTTCATAAAAGCTATAGTTACTGCCGAAGAAGTCCTACTACTTGACCCTCTTCGCCAAGAAGTTATTCCATTTGTGGATCAGCTAAGGAAGCTACTTGCTAAGAAGAGTTCATCTCAGGGCCATGAAGATGGAGCTGTAGATGAACGTGAAAATTACGTGAACGCATCGAGAGGAGGAAAGTGGTTGCCTGTTTCCGAAGCGGCTGAAGGTGTTCAGTATGAGCTCCCATTTGAGTTTCAGGTTCTGGAAAATGGGTTGGAGGTTGTGTGCATGTACTTGGATTCTAATGTGACAGACCTTGAGAGAGATGCTTATCCAGTTCTGGATGAACTAGCTCGGAATGTTAGTACCAAGAATCTAGAACGTGTGAGGAGCTTGAAAAGTAATCTTACCCGTATCCTTGCACGTGTTCAGAAGGTGCGGGACGAGATCGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTAACAAGGAAATGGATGCAGAATCAACAATCCGATGCTTTGCTGGGAGGTCTGGCTTCCAACAGCACCACTGACATTGTTCCCCATCTTCGTCGACTTAGTTCCACATGTAGCGGAAGTGTGGTGACAAACAATCTCTTGGATGATAATGATGTAGAGGATCTGGAGATGATGCTCGAGGCATATTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTAAGGGAATACATCGATGACACCGAGGATTACGTCAATATTCAACTTGACAATCAACGAAATGAACTCATTCAGTTTCAGTTGACACTGACCATTGCTTCATTTGCCATAGCCGTTGAAACCTTAATCGCAGGATTGTTTGGCATGAACATCCCTTGTAAATTGTACGAGACGGATGGGGTATTCGGGTACTTTGTCGGAGGTAGTTCAGCAGGATCTATGTTGATTTTCTTGCTTATTTTCGGGTATGCAAGATGGAAGAAACTTCTTGGTTCATGA 1080 42.5 MKLFLIQKKKSRIPFGVIVVILAAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKKSSSQGHEDGAVDERENYVNASRGGKWLPVSEAAEGVQYELPFEFQVLENGLEVVCMYLDSNVTDLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQSDALLGGLASNSTTDIVPHLRRLSSTCSGSVVTNNLLDDNDVEDLEMMLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCKLYETDGVFGYFVGGSSAGSMLIFLLIFGYARWKKLLGS 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3768900 3775454 + Sed0026970.3 Sed13g0549 734059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0549 359 Gene3D - 10 50 - -
Sed13g0549 359 Coils Coil 157 191 - -
Sed13g0549 359 Gene3D Magnesium transport protein CorA, transmembrane region 57 290 - -
Sed13g0549 359 CDD Mrs2_Mfm1p-like 22 356 IPR039204 -
Sed13g0549 359 Gene3D Magnesium transport protein CorA, transmembrane region 297 357 - -
Sed13g0549 359 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 295 342 IPR045863 -
Sed13g0549 359 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 22 356 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Sed13g0549 359 Pfam Magnesium transporter MRS2-like 19 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1594 Sed-Chr4:30704261 Sed13g0549 Sed-Chr13:3768900 1.60E-163 dispersed
Sed13g0547 Sed-Chr13:3768900 Sed13g0549 Sed-Chr13:3768900 6.20E-187 dispersed
Sed13g0548 Sed-Chr13:3768900 Sed13g0549 Sed-Chr13:3768900 1.50E-134 tandem
Sed13g0549 Sed-Chr13:3768900 Sed13g0550 Sed-Chr13:3768900 5.50E-146 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0549 K16075 - csv:101203496 557.755