Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0562 ATGACTTATGTGCAGATTGGCCAAGGGACTTATAGTAATGTATATAGGGCTCGTGACCTTGACCAAAAGAAAATTGTTGCTTTGAAGAAAGTAAGGTTTGACAACCTTGAACCTGAGAGCGTTCGCTTCATGGCGAGGGAAATTCACATATTGCGTAGACTTGACCATCCGAATGTGATAAAGCTGGAGGGTCTAGTTACATCAAGGATGTCTTGCAGCCTCTATCTTGTCTTTGAGTACATGGAACATGACTTGGCAGGACTTGCCTCACACCCTGGTGTGAAGTTTACAGAGGCGCAGGTCAAATGTTACATGCAGCAACTCTTACGTGGACTTGATCATTGTCACAGTCATGGAGTTCTACATCGTGATATAAAGGGTTCCAATCTTCTAATTGACAATAATGGTATCTTGAAAATTGCTGACTTTGGTCTAGCAAGTGTTTTTGATATCCACCAAAATCAGCCTCTAACAAGTCGGGTTGTGACACTTTGGTATCGACCACCTGAGCTTTTACTTGGTGCCACTTATTATGGTACAGCTGTAGATTTGTGGAGTACTGGCTGCATACTTGCTGAATTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACAGAGGTGGAACAGCTACATAAAATATTTAAACTCTGTGGCTCTCCTTCAGAGGATTATTGGAGAAAATCAAGGTTGCCGCATGCAACGATATTCAAGCCCCAACAGCCATATAGACGCTGTGTTGCAGACACGTTTAAAGATTTCCCTGCACCAGCTTTAGCGCTCATTGAGATGCTACTCTCTGTAGATCCTGCTGATCGTGGCTCTGCCGCACTTGCCCTTAAAGGCGAATTTTTCTCAACCAAGCCACTTCCTTGTGATCCTTCAAGCTTGCCAAGGTATCCTCCAAGCAAAGAATTTGATGCCAAGATGAGGGATGAGGAATCTAGAAGACAAGGAGCAGTAGGAAGCAAGGGACACCGACTTGACCTACAAAGGAAAGATAGGGAGTCTCGTGCCGTCCCTGCACCCGATGCCAATGCTGAGTTAGCCTCATCAATGCAGAAAAGACAATCCACTTCGAAGAGCAGAAGTGAGAAGTTTAACCCAAATCCAGAAGAAGCTTCTGGCTTTCCAATTGATCCACCTAGACCATCACAAGGAACAGAAAGAATGGATTCTCAGTTGCGTCATCCGAAGAAAGCCTCACATTCTGGGCCACTTACTCAGCGGGCCGCTTGGGCGAAAGCTAGTAAGAACCAAGAAGACGCTCCCAAAATCTCAACCGGGGCCGAGGCTTTCACGACTTCAGGACTATTAGCAGCTAGACGAAGTATGCTGGCTGAAGATTGCAGGGAAAAGTCCGACTCTTCACAAGGAGAGGTTAAAAAACTAATTGCCAGATTCCCTGGTTCCTTCAAAGAAACCTCAGAATCATCGATGCTAGCGGACCAGGAGTTCTCAAATCACAGTATTGTCGGCTCACATGACAAAGAGAGGAGCAGCACCAACAAAGACCCTATAGCTGTGGGTTATGGCTCAAAGGGTCATAAGATGCATTACTCTGGTCCATTACTGGCTCCTTCTGGCAACATGGACCAAATGTTGAAGGACCACGATCGCCATATCCAAGAGGCAGTAAGACGAGCTCGGCTTGACAAGGCTAAGGTGCGAAAGGCTCAAGCTGATGGGAAACAGATGCCGACAAATTCGTTATTCGTCTCGGGTCGTTAA 1728 46.06 MTYVQIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASVFDIHQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVADTFKDFPAPALALIEMLLSVDPADRGSAALALKGEFFSTKPLPCDPSSLPRYPPSKEFDAKMRDEESRRQGAVGSKGHRLDLQRKDRESRAVPAPDANAELASSMQKRQSTSKSRSEKFNPNPEEASGFPIDPPRPSQGTERMDSQLRHPKKASHSGPLTQRAAWAKASKNQEDAPKISTGAEAFTTSGLLAARRSMLAEDCREKSDSSQGEVKKLIARFPGSFKETSESSMLADQEFSNHSIVGSHDKERSSTNKDPIAVGYGSKGHKMHYSGPLLAPSGNMDQMLKDHDRHIQEAVRRARLDKAKVRKAQADGKQMPTNSLFVSGR 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3905877 3912692 + Sed0011287.1 Sed13g0562 734072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0562 575 Gene3D Transferase(Phosphotransferase) domain 1 83 323 - -
Sed13g0562 575 MobiDBLite consensus disorder prediction 290 428 - -
Sed13g0562 575 ProSitePatterns Protein kinases ATP-binding region signature. 6 29 IPR017441 GO:0005524(InterPro)
Sed13g0562 575 PANTHER CELL DIVISION PROTEIN KINASE 5 284 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed13g0562 575 Pfam Protein kinase domain 4 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0562 575 SMART serkin_6 1 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0562 575 FunFam probable serine/threonine-protein kinase At1g54610 83 324 - -
Sed13g0562 575 Gene3D Phosphorylase Kinase; domain 1 2 82 - -
Sed13g0562 575 ProSiteProfiles Protein kinase domain profile. 1 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0562 575 SUPERFAMILY Protein kinase-like (PK-like) 5 292 IPR011009 -
Sed13g0562 575 CDD STKc_CDK9_like 5 284 - -
Sed13g0562 575 MobiDBLite consensus disorder prediction 554 575 - -
Sed13g0562 575 MobiDBLite consensus disorder prediction 303 340 - -
Sed13g0562 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0562 575 FunFam probable serine/threonine-protein kinase At1g54610 2 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0603 Sed-Chr3:3642509 Sed13g0562 Sed-Chr13:3905877 7.00E-91 dispersed
Sed05g3160 Sed-Chr5:41569146 Sed13g0562 Sed-Chr13:3905877 4.60E-168 dispersed
Sed12g0864 Sed-Chr12:5354875 Sed13g0562 Sed-Chr13:3905877 3.90E-158 dispersed
Sed12g0865 Sed-Chr12:5355710 Sed13g0562 Sed-Chr13:3905877 6.70E-158 dispersed
Sed13g0562 Sed-Chr13:3905877 Sed14g0766 Sed-Chr14:8140317 1.90E-103 dispersed
Sed13g0562 Sed-Chr13:3905877 Sed04g1587 Sed-Chr4:30652697 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80074 PF00069 Pkinase 1.70E-67 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0562 - - - 0.0