Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0592 ATGGCAGAGCAAGGAATGAGAAGAATGGGAGACAGCCACCGGAAAACCACCACAACGCCGCCGTCAAGGCTGGGGATGAGAACCACCGGCGGCGAAATCGTGGAGGTTCAAGGCGGCCACATTGTTCGCTCCACCGGAAGAAAAGATCGTCACAGCAAAGTCTGCACGGCCAAAGGTCCGAGAGACCGGCGGGTTCGCCTCGCGGCTCACACCGCGATCCAATTCTACGACGTCCAGGACCGGCTGGGCTACGACCGGCCCAGTAAGGCCGTGGACTGGCTCATCAATAAGGCTAAAGCCGCCATTGATGAGCTCGCCGAGCTCCCGGCATGGAACCCGAGCTCGGCGAATGCAACTACACAGCCTCAAGAACAGCAGCAGAGTCTAATTGGAGAAACCCCAAATCATCAGAATCTTGTTTTGGAGTTTCCTATGCACAATCATAGCACATCTAGCTTTCTTCCACCATCTTTGGACACAGACTCCATTGCTGATACCATCAAATCCTTCTTCCCTGTCGCCGCCGCCACGGCCGCGGCCGTGGAGACGACATCTGCATCGTTTCATAACTACCAACAAGATTTGATTTCCAGGACCAGTACTGGCCAGAACCAAGATCTGCGGCTTTCTTTGCAATCCTTTCAAGACCCAATTGCTCTTCACCGGCACCAGAATGAGCAGGCCTTGTTCTCAACCGGGTTTGATGTAACCACTGCTGGTTGGTCTGACCATAACAACCTCAACCCGGCGGAGATGAGCCGGTTTCCGAGGCTAAGTTCTTCTTGGAATGCTGATGGCGGAGCTGGTATTAGAACTCCAGGATATGTCTTTAACTCGCCTCATTTGCCTACTGCATTGCCATCATTTTTCAGTGAAAATCAGTTTTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACACCTTCAATTCGCGCTTGGATTGATCCATCACTTACAGCCACTGATCATCATCATCATCAAATGCCACCATCAATCCATCAGTCTTCGTATTCCGGTTTAGGATTCGCCTCGGGCGGGTTCTCCGGGTTTCACATTCCGGCGCGAATTCAGGGTGAGGAGGAGCATGATGGTATTTCAGATAAGCCATCCTCTGCTTCCTCTGATTCTCGCCATTGA 1137 52.33 MAEQGMRRMGDSHRKTTTTPPSRLGMRTTGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKAAIDELAELPAWNPSSANATTQPQEQQQSLIGETPNHQNLVLEFPMHNHSTSSFLPPSLDTDSIADTIKSFFPVAAATAAAVETTSASFHNYQQDLISRTSTGQNQDLRLSLQSFQDPIALHRHQNEQALFSTGFDVTTAGWSDHNNLNPAEMSRFPRLSSSWNADGGAGIRTPGYVFNSPHLPTALPSFFSENQFFSQRGPLQSSNTPSIRAWIDPSLTATDHHHHQMPPSIHQSSYSGLGFASGGFSGFHIPARIQGEEEHDGISDKPSSASSDSRH 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4119444 4121413 + Sed0009838.1 Sed13g0592 734102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0592 378 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 326 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Sed13g0592 378 ProSiteProfiles TCP domain profile. 47 105 IPR017887 -
Sed13g0592 378 MobiDBLite consensus disorder prediction 359 378 - -
Sed13g0592 378 Pfam TCP family transcription factor 46 134 IPR017887 -
Sed13g0592 378 MobiDBLite consensus disorder prediction 1 27 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0592 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2449 Sed-Chr4:37734130 Sed13g0592 Sed-Chr13:4119444 9.20E-87 dispersed
Sed05g1931 Sed-Chr5:32682141 Sed13g0592 Sed-Chr13:4119444 1.80E-24 dispersed
Sed05g3209 Sed-Chr5:41826115 Sed13g0592 Sed-Chr13:4119444 2.60E-31 dispersed
Sed11g2094 Sed-Chr11:34860431 Sed13g0592 Sed-Chr13:4119444 6.50E-14 dispersed
Sed13g0592 Sed-Chr13:4119444 Sed14g1575 Sed-Chr14:23850981 6.50E-20 dispersed
Sed13g0592 Sed-Chr13:4119444 Sed04g1559 Sed-Chr4:30357394 1.50E-149 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g2387 . 25 228 TCP Transcription Factor Family AT5G23280 63.8 1.1e-60 231.1
Sed04g2781 . 38 242 TCP Transcription Factor Family AT5G23280 58.0 1.4e-55 214.2
Sed03g0942 . 56 255 TCP Transcription Factor Family AT5G23280 59.0 4.1e-55 212.6
Sed04g2197 . 21 318 TCP Transcription Factor Family AT2G45680 52.3 1.4e-69 261.2
Sed06g1538 . 56 171 TCP Transcription Factor Family AT3G47620 78.8 1.7e-41 168.3
Sed08g2057 . 39 140 TCP Transcription Factor Family AT3G47620 81.4 1.1e-38 159.1
Sed08g1502 . 48 300 TCP Transcription Factor Family AT3G27010 55.4 4.5e-59 226.1
Sed06g0434 . 8 269 TCP Transcription Factor Family AT3G27010 53.9 6.5e-58 222.2
Sed07g2387 . 1 227 TCP Transcription Factor Family AT5G08330 58.4 1.2e-56 217.6
Sed03g0942 . 36 261 TCP Transcription Factor Family AT5G08330 58.3 1.6e-56 217.2
Sed04g2781 . 25 239 TCP Transcription Factor Family AT5G08330 56.1 5.1e-55 212.2
Sed13g0592 . 31 378 TCP Transcription Factor Family AT1G53230 52.9 3.6e-82 303.1
Sed06g0853 . 45 205 TCP Transcription Factor Family AT3G02150 54.5 1.1e-37 155.2
Sed06g0854 . 43 203 TCP Transcription Factor Family AT3G02150 54.5 1.1e-37 155.2
Sed06g1441 . 44 153 TCP Transcription Factor Family AT3G02150 70.2 2.5e-37 154.1
Sed04g1559 . 190 399 TCP Transcription Factor Family AT2G31070 50.5 3.7e-41 166.8
Sed13g0592 . 30 215 TCP Transcription Factor Family AT2G31070 53.9 4.1e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001202 4 3 4 3 3 1 4 2 1 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 2 2 2 3 3 1 75
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40358 PF03634 TCP 6.30E-32 No_clan Sed TF