Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0592 ATGGCAGAGCAAGGAATGAGAAGAATGGGAGACAGCCACCGGAAAACCACCACAACGCCGCCGTCAAGGCTGGGGATGAGAACCACCGGCGGCGAAATCGTGGAGGTTCAAGGCGGCCACATTGTTCGCTCCACCGGAAGAAAAGATCGTCACAGCAAAGTCTGCACGGCCAAAGGTCCGAGAGACCGGCGGGTTCGCCTCGCGGCTCACACCGCGATCCAATTCTACGACGTCCAGGACCGGCTGGGCTACGACCGGCCCAGTAAGGCCGTGGACTGGCTCATCAATAAGGCTAAAGCCGCCATTGATGAGCTCGCCGAGCTCCCGGCATGGAACCCGAGCTCGGCGAATGCAACTACACAGCCTCAAGAACAGCAGCAGAGTCTAATTGGAGAAACCCCAAATCATCAGAATCTTGTTTTGGAGTTTCCTATGCACAATCATAGCACATCTAGCTTTCTTCCACCATCTTTGGACACAGACTCCATTGCTGATACCATCAAATCCTTCTTCCCTGTCGCCGCCGCCACGGCCGCGGCCGTGGAGACGACATCTGCATCGTTTCATAACTACCAACAAGATTTGATTTCCAGGACCAGTACTGGCCAGAACCAAGATCTGCGGCTTTCTTTGCAATCCTTTCAAGACCCAATTGCTCTTCACCGGCACCAGAATGAGCAGGCCTTGTTCTCAACCGGGTTTGATGTAACCACTGCTGGTTGGTCTGACCATAACAACCTCAACCCGGCGGAGATGAGCCGGTTTCCGAGGCTAAGTTCTTCTTGGAATGCTGATGGCGGAGCTGGTATTAGAACTCCAGGATATGTCTTTAACTCGCCTCATTTGCCTACTGCATTGCCATCATTTTTCAGTGAAAATCAGTTTTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACACCTTCAATTCGCGCTTGGATTGATCCATCACTTACAGCCACTGATCATCATCATCATCAAATGCCACCATCAATCCATCAGTCTTCGTATTCCGGTTTAGGATTCGCCTCGGGCGGGTTCTCCGGGTTTCACATTCCGGCGCGAATTCAGGGTGAGGAGGAGCATGATGGTATTTCAGATAAGCCATCCTCTGCTTCCTCTGATTCTCGCCATTGA 1137 52.33 MAEQGMRRMGDSHRKTTTTPPSRLGMRTTGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKAAIDELAELPAWNPSSANATTQPQEQQQSLIGETPNHQNLVLEFPMHNHSTSSFLPPSLDTDSIADTIKSFFPVAAATAAAVETTSASFHNYQQDLISRTSTGQNQDLRLSLQSFQDPIALHRHQNEQALFSTGFDVTTAGWSDHNNLNPAEMSRFPRLSSSWNADGGAGIRTPGYVFNSPHLPTALPSFFSENQFFSQRGPLQSSNTPSIRAWIDPSLTATDHHHHQMPPSIHQSSYSGLGFASGGFSGFHIPARIQGEEEHDGISDKPSSASSDSRH 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4119444 4121413 + Sed0009838.1 Sed13g0592 734102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0592 378 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 326 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Sed13g0592 378 ProSiteProfiles TCP domain profile. 47 105 IPR017887 -
Sed13g0592 378 MobiDBLite consensus disorder prediction 359 378 - -
Sed13g0592 378 Pfam TCP family transcription factor 46 134 IPR017887 -
Sed13g0592 378 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2449 Sed-Chr4:37734130 Sed13g0592 Sed-Chr13:4119444 9.20E-87 dispersed
Sed05g1931 Sed-Chr5:32682141 Sed13g0592 Sed-Chr13:4119444 1.80E-24 dispersed
Sed05g3209 Sed-Chr5:41826115 Sed13g0592 Sed-Chr13:4119444 2.60E-31 dispersed
Sed11g2094 Sed-Chr11:34860431 Sed13g0592 Sed-Chr13:4119444 6.50E-14 dispersed
Sed13g0592 Sed-Chr13:4119444 Sed14g1575 Sed-Chr14:23850981 6.50E-20 dispersed
Sed13g0592 Sed-Chr13:4119444 Sed04g1559 Sed-Chr4:30357394 1.50E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40358 PF03634 TCP 6.30E-32 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0592 - - - 0.0