Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0604 ATGTCTCTTCGCAGATCCTTTCTCTCTCGGAAATTTTCCTCCAAATCCTCGTTTACAGATCCGAGCGGTGTCGGATTACCGATCCTTGGTTCATCGGCGGTTGACGACGGCGCCGGTCCGACCGGCGCCGACCGGATGCGGCCGGAATCTGGCTGGTCCTCCATGATACCGGAGCTTCTCCGGGATATCATTCAGCGAGTCGAGGCTTTCGACGACAGTTGGCCTAATCGCCAGAACGTGGTTTCGTGTGCTTGTGTCTGTAAGCGTTGGCGAGATATCACTATGGAGATCGCCAGGGACGCTTCTCATTCTGGGAAAATCATTTTCCCTTCCTGCCTTAAACAGCCTGGACCCATTGATCCTCCACATCAGTGTCTTATAAAAAGGAACAAGAAGACTTCAACATTCTACCTTTACCTTGCCCTTACACCATCATTTACAGATCAGGGAAAATTCCTCTTAGCTGCTCGGAGATATAGGCATGGAGCTCATACTGAGTATATAATATCTCTCGATGCTGAAGGCTTATCTCAAGGAAGCAATGCTTATGTGGGGAAGTTAAGCTCTGATTTTCTTGGCACCAATTTTACAATTTATGATAGCCAGCCACCACATAATGGTGCGAAACCATCGAGCAGTAAATCAAGCCGCCGTTTCGCAAGCAAGCAAATTAGCCCACAAGTTCCTGCAGGTAACTTTGAGGTTGGGCAAGTCTCTTACAAATTCAATCTTTTGAAATCAAGAGGACCGAGGAGAATGATATGCTCACTAAAGAGTCCGGTTTCAGAAGACAATGGCACCAGTAAACCGTGTGAGAACTCGAAAATGAAGGAACCTGAGTCCTTTGCTTCTTCATCTGGGTTGACAACCTTAAGAAACAAGGCTCCGAGGTGGCACGAGCACCTGCAATGCTGGTGCTTGAATTTTCACGGTCGGGTTACGGTAGCATCGGTTAAAAACTTTCAACTAGCTACGGTCGACTATAGCCAGCCAGGAGGTAAAGGGGACGATGAAACAATCCTACAATTTGGAAAGGTTGGCGACGATACGTTTACCATGGATTATAGGCAGCCATTATCAGCATTCCAGGCTTTCGCCATTTGCCTTACGAGCTTTGGCACGAAGCTGGCGTGCGAGTAG 1140 47.98 MSLRRSFLSRKFSSKSSFTDPSGVGLPILGSSAVDDGAGPTGADRMRPESGWSSMIPELLRDIIQRVEAFDDSWPNRQNVVSCACVCKRWRDITMEIARDASHSGKIIFPSCLKQPGPIDPPHQCLIKRNKKTSTFYLYLALTPSFTDQGKFLLAARRYRHGAHTEYIISLDAEGLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMICSLKSPVSEDNGTSKPCENSKMKEPESFASSSGLTTLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLATVDYSQPGGKGDDETILQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4196530 4201239 + Sed0011791.1 Sed13g0604 734114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0604 379 ProSitePatterns Tub family signature 1. 309 322 IPR018066 -
Sed13g0604 379 PANTHER TUBBY-RELATED 49 378 - -
Sed13g0604 379 MobiDBLite consensus disorder prediction 29 48 - -
Sed13g0604 379 ProSitePatterns Tub family signature 2. 364 379 IPR018066 -
Sed13g0604 379 Pfam F-box domain 52 93 IPR001810 GO:0005515(InterPro)
Sed13g0604 379 CDD F-box_AtTLP-like 52 96 - -
Sed13g0604 379 MobiDBLite consensus disorder prediction 258 287 - -
Sed13g0604 379 Pfam Tub family 113 374 IPR000007 -
Sed13g0604 379 PRINTS Tubby superfamily signature 336 355 IPR000007 -
Sed13g0604 379 PRINTS Tubby superfamily signature 309 325 IPR000007 -
Sed13g0604 379 PRINTS Tubby superfamily signature 357 379 IPR000007 -
Sed13g0604 379 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Sed13g0604 379 PRINTS Tubby superfamily signature 291 308 IPR000007 -
Sed13g0604 379 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Sed13g0604 379 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Sed13g0604 379 Gene3D Tubby Protein; Chain A 109 379 IPR025659 -
Sed13g0604 379 MobiDBLite consensus disorder prediction 201 221 - -
Sed13g0604 379 SUPERFAMILY Tubby C-terminal domain-like 102 379 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0721 Sed-Chr7:5390156 Sed13g0604 Sed-Chr13:4196530 2.10E-13 dispersed
Sed07g0722 Sed-Chr7:5390156 Sed13g0604 Sed-Chr13:4196530 1.80E-12 dispersed
Sed13g0604 Sed-Chr13:4196530 Sed13g0889 Sed-Chr13:6591280 2.50E-96 dispersed
Sed13g0604 Sed-Chr13:4196530 Sed04g1548 Sed-Chr4:30236640 1.20E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40359 PF01167 Tub 3.70E-100 CL0395 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0604 K19600 - csv:101211968 617.846