Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0629 ATGACGTCGGGGACGAGGCTACCGACATGGAGGGAGCGAGAGAACAACAAGAGAAGGGAGAGAAGGAGAAGAGCGATTGCGGCGAAGATCTTTGCTGGACTCAGGATGTACGGCAACTACAAGCTTCCCAAGCATTGCGACAACAATGAGGTTCTTAAAGCTCTTTGCAATGAAGCTGGATGGACTGTAGAACTTGATGGCACCACTTATCGTAAGGGATGCAAGCCAATCGAACGTATGGATGTGGTTGGGGGATCGGCAGCTGCAAGCCCGTACGCATCTCACCAACCAAGTCCTTGTGCTTCCTTCAATCCAAGCCCCGGCTCATCTTCTTTTCCAAGTCCAGCAGCATCCTCATATGTAGCTAATCCAAATGCAGATGGCAGCTCACTTATCCCATGGCTCAAAAACCTTTCATCTTCATCGTCTTCGGCATCCTCGTCAAAATTCCCCAATCTCTATATTCATGGAGGTTCCATCAGTGCTCCCGTTACTCCTCCTCTGAGTTCCCCAACTGCCAGAACACCCCGACTCAAAGCCGACTGGGAGGACCAGTCTGTCCTTCCAGGATGGAGTGCACAATTCTATTCCTCCCAGCCAAATTCAACTCCACCGAGCCCCGGGCGTCAGATTGTTCCGAATCCAGAATGGTTTGCTGGCCTTAGGATTCCTCAGGGTCCCAATTCTCCAACATATAGTCTTGTATCTGCTAACCCATTTGGTTTCAAGGAAGCAGCAACAAATGGTGGAGGGTCTCGCATGTGGACCCCTGGTCAAAGTGGGACCTGTTCCCCTGCCATTGCAGCAGGCTCCGATCACACTGCTGATATTCCTATGGCAGAAGCGATCTCTGACGAGTTCGCATTCGGAAGCAATGCAGCAGGAATTGTGAAGCCATGGGAAGGAGAACGAATTCATGAAGAATGTGGTTCAGATGATCTAGAGCTCACACTTGGGAACTCAAAAACCAGGTAA 975 50.46 MTSGTRLPTWRERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVELDGTTYRKGCKPIERMDVVGGSAAASPYASHQPSPCASFNPSPGSSSFPSPAASSYVANPNADGSSLIPWLKNLSSSSSSASSSKFPNLYIHGGSISAPVTPPLSSPTARTPRLKADWEDQSVLPGWSAQFYSSQPNSTPPSPGRQIVPNPEWFAGLRIPQGPNSPTYSLVSANPFGFKEAATNGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMAEAISDEFAFGSNAAGIVKPWEGERIHEECGSDDLELTLGNSKTR 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4291754 4297020 + Sed0012795.1 Sed13g0629 734139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0629 324 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 324 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Sed13g0629 324 MobiDBLite consensus disorder prediction 1 20 - -
Sed13g0629 324 MobiDBLite consensus disorder prediction 88 108 - -
Sed13g0629 324 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 139 IPR008540 -
Sed13g0629 324 MobiDBLite consensus disorder prediction 91 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2730 Sed-Chr8:39108351 Sed13g0629 Sed-Chr13:4291754 2.10E-107 dispersed
Sed13g0629 Sed-Chr13:4291754 Sed14g1094 Sed-Chr14:20448004 3.30E-49 dispersed
Sed13g0629 Sed-Chr13:4291754 Sed04g1537 Sed-Chr4:30179520 2.90E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40360 PF05687 BES1_N 2.50E-64 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0629 - - - 0.0