Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0631 ATGGATTTTCCAAGTTCTCCGTTCAGATTTCTCGCTCTTCTTCTTTTGTGGATTTTGCTGTTCCATGGATTCGGATCCGATGCTCAGCTTTTGCCTGAAATCGAAGTGAAAGCTCTTCAAACGATATCTTCAAAACTAAAGAATTTAAGCTGGAATGTTACTCGTAGTTCTTGCATTCATGGTGTAGGCTTCTCCAATCAAGCTTTTCTGGGAAACCAAATCTTGAGTAATGTCTCGTGCAATTGTACTTCCACTGTTTGTCACGTTACAATCATCCTGCTTAAGGGTCTCAATCTCACAGGAACTTTTCCAGCTGAATTTGGCAATCTTACTCATCTGCAGGAACTTGATCTTACTCGCAACCACATTAATGGCCAACTACCCACAAGTCTTGCCAATGCTCCTCTTGTCAAACTTGCTCTCTTAGGAAACAAGCTAAATGGTTCAATTCCTAAGGAAATTGGTGACATTGTCACCCTTGAAGATCTGGTCTTGGAAGACAACCAGCTAACTGGAAATCTACCTCCCAGCCTTGGTAATCTGAACCGTTTGAGTAGAATGCTTCTGTCTGCAAACAATTTCACAGGAACAATACCGGACTCATTTGGAAAATTAAAGAACTTGGTTGATTTTAGAATAGATGGGAATGGAGTGTCTGGCAAGATTCCTGAATTTATTGGGAATTGGGTCAACCTTGACAGACTGGATATTCAGGGAACATCATTGGAAAACCCCATTCCTTCTACAATATCTCAATTGAAGAACCTAACCCAATTGAGGATATCTGATTTGAAGGGATCATTTATAAGTTTCCCCAATTTGACAGATATGATAAATATGGAAGAATTGGTTCTGAGGAACTGTTTAATTAATGGTTCAATCCCTCCGTATGTTGGAGAAATGAATAAATTATCAACTCTAGATCTAAGCTTCAACCATTTAACCGGTCCAATTCCTGAGACATTTCAGAATCTGATAAAGAAAAAGATAGACTTCATGTTTCTGACGAACAACTCACTGAGTGGTGAAGTGCCAGGTTGGATCTTGAGGAGCAAAAAGAACATAGATTTGTCTTACAACAATTTTTCAGGGTCTACTGTTGCTAGTTGCCAACAATTGCCAGTGAACCTGATAGCTAGTTACCCACCTGCAGGGAATCATCAAGTTCCTTGGTGTCTCAAGAAGGACCTTCCATGCTCTGGAAAAGCTGAACATCATTCCTTGTTTATTAATTGTGGAGGAACCAGATTGAGTGTTGATGGGCATGATTATGAAGAGGACTTAACTACAGAAGGCAAGTCAAACTTCTTTTCTATGTCAGAAAAGTGGGCTCTTAGCAGTACAGGAGTTTTTTTGGGCGATGAAAATGCCGATTTCTTAGCTGCAAATAAGTTTGGACTGAATGTGACTGGTCCGCGCTATTATCAAACTGCACGACTTTCTCCTCTCTCCCTCAATTACTATGGTCTTTGCTTGCGGAGCGGAAGCTACAATGTGAAGCTCCATTTTGCAGAAATTATGTACTCTAATGATCAAACTTTCAGCAGCCTCGGAAAGCGTATATTTGATATATCAATTCAAGGGAAAATAGTTAAAAAGGATTTCAATATTGTGGAGGCAGCTGGGGGTGTTGGTAAGAACTTCACAGTGGAAGATAAAAATGTTCTAGTCAATGGAAGTACCCTTGAGATTCATCTATATTGGGCTGGTAAAGGAACCACAGCTGTGCCAGGCAGAGGAGTTTATGGACCCCTTATTTCTGCTATCACAGTTACCCCAAACTTTGAAATTGACGAGGGAGGACTATCGGCTGGAGCACTTGCCGGCATTATAATTTCATCATGTGTTGTAGTCATCATATTGGTGGTCGTATTTCTTTGGATGAAAGGTTGCATATGTAAGAAGGAAGAGCCAGATAATGAGCTTTCTGGTGTAGATTTACTAACGGGTCGTTTTACCTTGAAACAAATTAAAGCTGCAACCAACAACTTTGATCCTAAAAGTAAAATAGGCGAAGGTGGATTTGGGCCTGTCTACAAGGGTGTACTGTCAGATGGTGCTTTGATTGCCGTGAAGCAACTCTCCTCGAAATCTAAGCAAGGGAGTCGTGAGTTTGTCACAGAGATCGGTATGATATCTGCATTGCAACACCCAAATCTAGTTAAGCTGTATGGCTGCTGCATTGAAGCAAACCAGTTGTTGCTTGTATATGAATACATGGAAAACAATAGTCTTGCCCGTGCGCTTTTCGGTCGCGAGGAACAAAGGCTACACCTTGACTGGCGAACAAGAAAGAAGATATGCTTGGAGATAGCTAGAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATTGTTCATAGAGACATAAAGGCCACAAATGTGCTGCTTGATACGGATCTTACTGCAAAGATTTCTGACTTTGGTTTGGCTAAGCTTGATGAAGAGGAGAACACGCACATTAGCACGCGAATTGCTGGAACCATTGGTTATATGGCACCTGAGTATGCAATGAGAGGGTACCTGACTGATAAGGCAGATGTTTACAGCTTTGGAATTGTTGCTTTGGAGATAGTTAGTGGAAAAAGCAACACAAATTATAGGCCAAAGGAAGACTTCGTCTATCTTCTTGATTGGGCCTATGTACTGGAAGAACAAGGTAACCTTCTAGAACTAGTAGATCCAGACCTTGGTTCAAAGTATTCATCAGAGGAAGCAATGAGGATGTTGAACATAGCTCTCTTATGCACCAATCCATCTCCCACTCTCAGACCAGCCATGTCTTCTGTGGTGAGTATGCTTGAAGGTAAGATTAAAGTCCAAGCACCAATCATCAAACGCACGGCATCGGGCCAAGATCCACGGTTCAGAGCGTTCGAGAAGCTCTCACATGACAACAGATCGACATTTTTGCAAGAATCTGAGGTTCAGAAGAGCATGTTAATGGATGGACCATCTACTGATTCCTTAGTATCCAATGACAGCAATGACAAGAATCTCTACCATTCTGCATCGAGTGATCCCCTCGAAAATCATCGTCATGCTGATGATTCGAAACCGTCAACTTAG 3072 41.44 MDFPSSPFRFLALLLLWILLFHGFGSDAQLLPEIEVKALQTISSKLKNLSWNVTRSSCIHGVGFSNQAFLGNQILSNVSCNCTSTVCHVTIILLKGLNLTGTFPAEFGNLTHLQELDLTRNHINGQLPTSLANAPLVKLALLGNKLNGSIPKEIGDIVTLEDLVLEDNQLTGNLPPSLGNLNRLSRMLLSANNFTGTIPDSFGKLKNLVDFRIDGNGVSGKIPEFIGNWVNLDRLDIQGTSLENPIPSTISQLKNLTQLRISDLKGSFISFPNLTDMINMEELVLRNCLINGSIPPYVGEMNKLSTLDLSFNHLTGPIPETFQNLIKKKIDFMFLTNNSLSGEVPGWILRSKKNIDLSYNNFSGSTVASCQQLPVNLIASYPPAGNHQVPWCLKKDLPCSGKAEHHSLFINCGGTRLSVDGHDYEEDLTTEGKSNFFSMSEKWALSSTGVFLGDENADFLAANKFGLNVTGPRYYQTARLSPLSLNYYGLCLRSGSYNVKLHFAEIMYSNDQTFSSLGKRIFDISIQGKIVKKDFNIVEAAGGVGKNFTVEDKNVLVNGSTLEIHLYWAGKGTTAVPGRGVYGPLISAITVTPNFEIDEGGLSAGALAGIIISSCVVVIILVVVFLWMKGCICKKEEPDNELSGVDLLTGRFTLKQIKAATNNFDPKSKIGEGGFGPVYKGVLSDGALIAVKQLSSKSKQGSREFVTEIGMISALQHPNLVKLYGCCIEANQLLLVYEYMENNSLARALFGREEQRLHLDWRTRKKICLEIARGLAYLHEESRLKIVHRDIKATNVLLDTDLTAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEDFVYLLDWAYVLEEQGNLLELVDPDLGSKYSSEEAMRMLNIALLCTNPSPTLRPAMSSVVSMLEGKIKVQAPIIKRTASGQDPRFRAFEKLSHDNRSTFLQESEVQKSMLMDGPSTDSLVSNDSNDKNLYHSASSDPLENHRHADDSKPST 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4306822 4321703 - Sed0016500.1 Sed13g0631 734141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0631 1023 Gene3D Ribonuclease Inhibitor 267 373 IPR032675 -
Sed13g0631 1023 Gene3D Ribonuclease Inhibitor 169 266 IPR032675 -
Sed13g0631 1023 SUPERFAMILY L domain-like 72 326 - -
Sed13g0631 1023 Gene3D - 403 594 - -
Sed13g0631 1023 Pfam Leucine Rich Repeat 112 133 IPR001611 GO:0005515(InterPro)
Sed13g0631 1023 Pfam Leucine Rich Repeat 303 325 IPR001611 GO:0005515(InterPro)
Sed13g0631 1023 Pfam Leucine Rich Repeat 160 181 IPR001611 GO:0005515(InterPro)
Sed13g0631 1023 Pfam Leucine Rich Repeat 184 205 IPR001611 GO:0005515(InterPro)
Sed13g0631 1023 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 405 594 - -
Sed13g0631 1023 ProSiteProfiles Protein kinase domain profile. 664 946 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0631 1023 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 265 - -
Sed13g0631 1023 MobiDBLite consensus disorder prediction 1008 1023 - -
Sed13g0631 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0631 1023 Gene3D Phosphorylase Kinase; domain 1 631 739 - -
Sed13g0631 1023 SMART serkin_6 664 933 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0631 1023 MobiDBLite consensus disorder prediction 983 1007 - -
Sed13g0631 1023 Pfam Malectin domain 408 589 IPR021720 -
Sed13g0631 1023 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 35 197 - -
Sed13g0631 1023 Pfam Protein tyrosine and serine/threonine kinase 667 934 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0631 1023 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 960 IPR051824 -
Sed13g0631 1023 Gene3D Transferase(Phosphotransferase) domain 1 740 948 - -
Sed13g0631 1023 SUPERFAMILY Protein kinase-like (PK-like) 648 936 IPR011009 -
Sed13g0631 1023 MobiDBLite consensus disorder prediction 983 1023 - -
Sed13g0631 1023 CDD STKc_IRAK 670 937 - -
Sed13g0631 1023 Gene3D Ribonuclease Inhibitor 35 161 IPR032675 -
Sed13g0631 1023 FunFam Putative LRR receptor-like serine/threonine-protein kinase 740 947 - -
Sed13g0631 1023 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 633 739 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1850 Sed-Chr5:31943013 Sed13g0631 Sed-Chr13:4306822 1.70E-142 dispersed
Sed05g2497 Sed-Chr5:37030116 Sed13g0631 Sed-Chr13:4306822 0.00E+00 dispersed
Sed05g2498 Sed-Chr5:37030718 Sed13g0631 Sed-Chr13:4306822 3.40E-277 dispersed
Sed05g2511 Sed-Chr5:37189040 Sed13g0631 Sed-Chr13:4306822 2.20E-202 dispersed
Sed05g2513 Sed-Chr5:37215751 Sed13g0631 Sed-Chr13:4306822 9.00E-181 dispersed
Sed08g2720 Sed-Chr8:39076476 Sed13g0631 Sed-Chr13:4306822 1.50E-163 dispersed
Sed08g2721 Sed-Chr8:39076476 Sed13g0631 Sed-Chr13:4306822 1.50E-163 dispersed
Sed13g0631 Sed-Chr13:4306822 Sed13g0632 Sed-Chr13:4306822 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80075 PF07714 PK_Tyr_Ser-Thr 1.80E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0631 - - - 0.0