Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0632 ATGGATTTTCCAAGTTCTCCGTTCAGATTTCTCGCTCTTCTTCTTTTGTGGATTTTGCTGTTCCATGGATTCGGATCCGATGCTCAGCTTTTGCCTGAAATCGAAGTGAAAGCTCTTCAAACGATATCTTCAAAACTAAAGAATTTAAGCTGGAATGTTACTCGTAGTTCTTGCATTCATGGTGTAGGCTTCTCCAATCAAGCTTTTCTGGGAAACCAAATCTTGAGTAATGTCTCGTGCAATTGTACTTCCACTGTTTGTCACGTTACAATCATCCTGCTTAAGGGTCTCAATCTCACAGGAACTTTTCCAGCTGAATTTGGCAATCTTACTCATCTGCAGGAACTTGATCTTACTCGCAACCACATTAATGGCCAACTACCCACAAGTCTTGCCAATGCTCCTCTTGTCAAACTTGCTCTCTTAGGAAACAAGCTAAATGGTTCAATTCCTAAGGAAATTGGTGACATTGTCACCCTTGAAGATCTGGTCTTGGAAGACAACCAGCTAACTGGAAATCTACCTCCCAGCCTTGGTAATCTGAACCGTTTGAGTAGAATGCTTCTGTCTGCAAACAATTTCACAGGAACAATACCGGACTCATTTGGAAAATTAAAGAACTTGGTTGATTTTAGAATAGATGGGAATGGAGTGTCTGGCAAGATTCCTGAATTTATTGGGAATTGGGTCAACCTTGACAGACTGGATATTCAGGGAACATCATTGGAAAACCCCATTCCTTCTACAATATCTCAATTGAAGAACCTAACCCAATTGAGGATATCTGATTTGAAGGGATCATTTATAAGTTTCCCCAATTTGACAGATATGATAAATATGGAAGAATTGGTTCTGAGGAACTGTTTAATTAATGGTTCAATCCCTCCGTATGTTGGAGAAATGAATAAATTATCAACTCTAGATCTAAGCTTCAACCATTTAACCGGTCCAATTCCTGAGACATTTCAGAATCTGATAAAGAAAAAGATAGACTTCATGTTTCTGACGAACAACTCACTGAGTGGTGAAGTGCCAGGTTGGATCTTGAGGAGCAAAAAGAACATAGATTTGTCTTACAACAATTTTTCAGGGTCTACTGTTGCTAGTTGCCAACAATTGCCAGTGAACCTGATAGCTAGTTACCCACCTGCAGGGAATCATCAAGTTCCTTGGTGTCTCAAGAAGGACCTTCCATGCTCTGGAAAAGCTGAACATCATTCCTTGTTTATTAATTGTGGAGGAACCAGATTGAGTGTTGATGGGCATGATTATGAAGAGGACTTAACTACAGAAGGCAAGTCAAACTTCTTTTCTATGTCAGAAAAGTGGGCTCTTAGCAGTACAGGAGTTTTTTTGGGCGATGAAAATGCCGATTTCTTAGCTGCAAATAAGTTTGGACTGAATGTGACTGGTCCGCGCTATTATCAAACTGCACGACTTTCTCCTCTCTCCCTCAATTACTATGGTCTTTGCTTGCGGAGCGGAAGCTACAATGTGAAGCTCCATTTTGCAGAAATTATGTACTCTAATGATCAAACTTTCAGCAGCCTCGGAAAGCGTATATTTGATATATCAATTCAAGGGAAAATAGTTAAAAAGGATTTCAATATTGTGGAGGCAGCTGGGGGTGTTGGTAAGAACTTCACAGTGGAAGATAAAAATGTTCTAGTCAATGGAAGTACCCTTGAGATTCATCTATATTGGGCTGGTAAAGGAACCACAGCTGTGCCAGGCAGAGGAGTTTATGGACCCCTTATTTCTGCTATCACAGTTACCCCAAACTTTGAAATTGACGAGGGAGGACTATCGGCTGGAGCACTTGCCGGCATTATAATTTCATCATGTGTTGTAGTCATCATATTGGTGGTCGTATTTCTTTGGATGAAAGGTTGCATATGTAAGAAGGAAGAGCCAGATAATGAGCTTTCTGGTGTAGATTTACTAACGGGTCGTTTTACCTTGAAACAAATTAAAGCTGCAACCAACAACTTTGATCCTAAAAGTAAAATAGGCGAAGGTGGATTTGGGCCTGTCTACAAGGGTGTACTGTCAGATGGTGCTTTGATTGCCGTGAAGCAACTCTCCTCGAAATCTAAGCAAGGGAGTCGTGAGTTTGTCACAGAGATCGGTATGATATCTGCATTGCAACACCCAAATCTAGTTAAGCTGTATGGCTGCTGCATTGAAGCAAACCAGTTGTTGCTTGTATATGAATACATGGAAAACAATAGTCTTGCCCGTGCGCTTTTCGGTCGCGAGGAACAAAGGCTACACCTTGACTGGCGAACAAGAAAGAAGATATGCTTGGAGATAGCTAGAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATTGTTCATAGAGACATAAAGGCCACAAATGTGCTGCTTGATACGGATCTTACTGCAAAGATTTCTGACTTTGGTTTGGCTAAGCTTGATGAAGAGGAGAACACGCACATTAGCACGCGAATTGCTGGAACCATGTACTCTTTCTCTCTTTCTGTGCACGTGCATGCCCCCATAAACTTACATATTTGTGCCATTGTGTACTATTGA 2562 40.98 MDFPSSPFRFLALLLLWILLFHGFGSDAQLLPEIEVKALQTISSKLKNLSWNVTRSSCIHGVGFSNQAFLGNQILSNVSCNCTSTVCHVTIILLKGLNLTGTFPAEFGNLTHLQELDLTRNHINGQLPTSLANAPLVKLALLGNKLNGSIPKEIGDIVTLEDLVLEDNQLTGNLPPSLGNLNRLSRMLLSANNFTGTIPDSFGKLKNLVDFRIDGNGVSGKIPEFIGNWVNLDRLDIQGTSLENPIPSTISQLKNLTQLRISDLKGSFISFPNLTDMINMEELVLRNCLINGSIPPYVGEMNKLSTLDLSFNHLTGPIPETFQNLIKKKIDFMFLTNNSLSGEVPGWILRSKKNIDLSYNNFSGSTVASCQQLPVNLIASYPPAGNHQVPWCLKKDLPCSGKAEHHSLFINCGGTRLSVDGHDYEEDLTTEGKSNFFSMSEKWALSSTGVFLGDENADFLAANKFGLNVTGPRYYQTARLSPLSLNYYGLCLRSGSYNVKLHFAEIMYSNDQTFSSLGKRIFDISIQGKIVKKDFNIVEAAGGVGKNFTVEDKNVLVNGSTLEIHLYWAGKGTTAVPGRGVYGPLISAITVTPNFEIDEGGLSAGALAGIIISSCVVVIILVVVFLWMKGCICKKEEPDNELSGVDLLTGRFTLKQIKAATNNFDPKSKIGEGGFGPVYKGVLSDGALIAVKQLSSKSKQGSREFVTEIGMISALQHPNLVKLYGCCIEANQLLLVYEYMENNSLARALFGREEQRLHLDWRTRKKICLEIARGLAYLHEESRLKIVHRDIKATNVLLDTDLTAKISDFGLAKLDEEENTHISTRIAGTMYSFSLSVHVHAPINLHICAIVYY 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4306822 4321703 - Sed0016500.2 Sed13g0632 734142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0632 853 Gene3D - 403 594 - -
Sed13g0632 853 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 830 IPR051824 -
Sed13g0632 853 SUPERFAMILY Protein kinase-like (PK-like) 648 831 IPR011009 -
Sed13g0632 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g0632 853 SUPERFAMILY L domain-like 79 364 - -
Sed13g0632 853 Gene3D Transferase(Phosphotransferase) domain 1 740 844 - -
Sed13g0632 853 SMART serkin_6 664 853 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0632 853 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 35 197 - -
Sed13g0632 853 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 405 594 - -
Sed13g0632 853 Gene3D Ribonuclease Inhibitor 267 376 IPR032675 -
Sed13g0632 853 ProSiteProfiles Protein kinase domain profile. 664 853 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0632 853 Gene3D Phosphorylase Kinase; domain 1 631 739 - -
Sed13g0632 853 Gene3D Ribonuclease Inhibitor 163 266 IPR032675 -
Sed13g0632 853 Gene3D Ribonuclease Inhibitor 34 160 IPR032675 -
Sed13g0632 853 FunFam Os07g0541700 protein 740 829 - -
Sed13g0632 853 Pfam Leucine Rich Repeat 160 181 IPR001611 GO:0005515(InterPro)
Sed13g0632 853 Pfam Leucine Rich Repeat 303 325 IPR001611 GO:0005515(InterPro)
Sed13g0632 853 Pfam Leucine Rich Repeat 184 205 IPR001611 GO:0005515(InterPro)
Sed13g0632 853 Pfam Leucine Rich Repeat 112 133 IPR001611 GO:0005515(InterPro)
Sed13g0632 853 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 265 - -
Sed13g0632 853 Pfam Protein kinase domain 666 829 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0632 853 Pfam Malectin domain 408 589 IPR021720 -
Sed13g0632 853 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 633 739 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1851 Sed-Chr5:31943013 Sed13g0632 Sed-Chr13:4306822 6.80E-105 dispersed
Sed13g0631 Sed-Chr13:4306822 Sed13g0632 Sed-Chr13:4306822 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80076 PF11721 Malectin 2.40E-40 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0632 - - - 0.0