Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0634 ATGAAGATTCAGTGTAATGTGTGTGATTTGGCTGAAGCGACCGTTCTGTGTTGTGCTGATGAGGCGGCGTTGTGTTGGGCCTGCGATGAGAAGATTCATACGGCGAATAAGCTCGCTAGCAAGCACCAGAGAGTTCCTCTGTCTGGTTCTTCATCTCAGATGCCCAAATGCGACATCTGTCAGGAAGCTAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGCGATGTTGCTATACACACTGCAAATACTTTTGTAACTGGTCATCAGCGCTTTCTGCTCACTGGTGTGAAAGTCGCACTTGAGTCAACTGACCCCGTTCCTTGTTCTTCCGTTGCCAAGTCGCTCACCAAAGAGAAATCTACTGAGACAAAAGTTAGAATGGTGTCTGAAAGGGGATTCTCGATGCCTTCTCCTGGCGAACTTAGCAGAAGCCTGTCTGTTCAAGGTGGATATGAGGACTTCATGGAAAATAGAACGCTGCTTACTGGAGATACTGTTTCTGGTGGCTTTTCACAATGGCAAATGGATGAACTTATTAACCTGACTGGATTCGATCAGAATTACGAGTATACGGATAATGGGTCATCCAAGGCTGACAGTGGAAAGCTTGGGGAGTCTGATTCATCACCAATTTTGAGAGCTGATGATGTTGAACTGGACGATGACAACGAGTGCTCGGGCCACGTTCCAGAGGCTTCCTGGACTGTGCCTCAGATTCCCTCCCCACCCACAGCATCTGGCTTATATTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCGGTTTTTGTTCCCGACATCTCTTGTTCTTCACCAAAGATTCAACATTTCGCACGTAACGGTAGATTCCCGAAACAAAGGAGGCAGTTCTAG 891 46.8 MKIQCNVCDLAEATVLCCADEAALCWACDEKIHTANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTFVTGHQRFLLTGVKVALESTDPVPCSSVAKSLTKEKSTETKVRMVSERGFSMPSPGELSRSLSVQGGYEDFMENRTLLTGDTVSGGFSQWQMDELINLTGFDQNYEYTDNGSSKADSGKLGESDSSPILRADDVELDDDNECSGHVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSPKIQHFARNGRFPKQRRQF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4329231 4335645 - Sed0013847.1 Sed13g0634 734144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0634 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Sed13g0634 296 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 275 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Sed13g0634 296 CDD Bbox1_BBX-like 56 99 IPR049808 -
Sed13g0634 296 CDD Bbox1_BBX-like 5 47 IPR049808 -
Sed13g0634 296 Gene3D Classic Zinc Finger 1 92 - -
Sed13g0634 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Sed13g0634 296 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270(InterPro)
Sed13g0634 296 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Sed13g0634 296 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Sed13g0634 296 FunFam B-box zinc finger protein 22 1 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1069 Sed-Chr11:26168050 Sed13g0634 Sed-Chr13:4329231 4.30E-30 dispersed
Sed13g0634 Sed-Chr13:4329231 Sed13g0882 Sed-Chr13:6542274 4.60E-21 dispersed
Sed09g0407 Sed-Chr9:3899150 Sed13g0634 Sed-Chr13:4329231 1.10E-33 transposed
Sed13g0634 Sed-Chr13:4329231 Sed04g1531 Sed-Chr4:30130908 9.20E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40361 PF00643 zf-B_box 3.20E-07 No_clan Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0634 - - - 0.0