Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0634 ATGAAGATTCAGTGTAATGTGTGTGATTTGGCTGAAGCGACCGTTCTGTGTTGTGCTGATGAGGCGGCGTTGTGTTGGGCCTGCGATGAGAAGATTCATACGGCGAATAAGCTCGCTAGCAAGCACCAGAGAGTTCCTCTGTCTGGTTCTTCATCTCAGATGCCCAAATGCGACATCTGTCAGGAAGCTAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGCGATGTTGCTATACACACTGCAAATACTTTTGTAACTGGTCATCAGCGCTTTCTGCTCACTGGTGTGAAAGTCGCACTTGAGTCAACTGACCCCGTTCCTTGTTCTTCCGTTGCCAAGTCGCTCACCAAAGAGAAATCTACTGAGACAAAAGTTAGAATGGTGTCTGAAAGGGGATTCTCGATGCCTTCTCCTGGCGAACTTAGCAGAAGCCTGTCTGTTCAAGGTGGATATGAGGACTTCATGGAAAATAGAACGCTGCTTACTGGAGATACTGTTTCTGGTGGCTTTTCACAATGGCAAATGGATGAACTTATTAACCTGACTGGATTCGATCAGAATTACGAGTATACGGATAATGGGTCATCCAAGGCTGACAGTGGAAAGCTTGGGGAGTCTGATTCATCACCAATTTTGAGAGCTGATGATGTTGAACTGGACGATGACAACGAGTGCTCGGGCCACGTTCCAGAGGCTTCCTGGACTGTGCCTCAGATTCCCTCCCCACCCACAGCATCTGGCTTATATTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCGGTTTTTGTTCCCGACATCTCTTGTTCTTCACCAAAGATTCAACATTTCGCACGTAACGGTAGATTCCCGAAACAAAGGAGGCAGTTCTAG 891 46.8 MKIQCNVCDLAEATVLCCADEAALCWACDEKIHTANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTFVTGHQRFLLTGVKVALESTDPVPCSSVAKSLTKEKSTETKVRMVSERGFSMPSPGELSRSLSVQGGYEDFMENRTLLTGDTVSGGFSQWQMDELINLTGFDQNYEYTDNGSSKADSGKLGESDSSPILRADDVELDDDNECSGHVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSPKIQHFARNGRFPKQRRQF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4329231 4335645 - Sed0013847.1 Sed13g0634 734144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0634 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Sed13g0634 296 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 275 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Sed13g0634 296 CDD Bbox1_BBX-like 56 99 IPR049808 -
Sed13g0634 296 CDD Bbox1_BBX-like 5 47 IPR049808 -
Sed13g0634 296 Gene3D Classic Zinc Finger 1 92 - -
Sed13g0634 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Sed13g0634 296 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270(InterPro)
Sed13g0634 296 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Sed13g0634 296 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Sed13g0634 296 FunFam B-box zinc finger protein 22 1 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0634 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1069 Sed-Chr11:26168050 Sed13g0634 Sed-Chr13:4329231 4.30E-30 dispersed
Sed13g0634 Sed-Chr13:4329231 Sed13g0882 Sed-Chr13:6542274 4.60E-21 dispersed
Sed09g0407 Sed-Chr9:3899150 Sed13g0634 Sed-Chr13:4329231 1.10E-33 transposed
Sed13g0634 Sed-Chr13:4329231 Sed04g1531 Sed-Chr4:30130908 9.20E-147 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g4023 . 32 343 Orphan Transcription Factor Family AT5G61850 71.3 6.2e-112 402.1
Sed09g0407 . 1 169 Orphan Transcription Factor Family AT1G06040 67.8 6.1e-61 231.5
Sed13g0634 . 1 109 Orphan Transcription Factor Family AT1G06040 67.0 5.5e-38 155.2
Sed04g1531 . 1 109 Orphan Transcription Factor Family AT1G06040 67.0 3.6e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40361 PF00643 zf-B_box 3.20E-07 No_clan Sed TR