Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g0648 | ATGCCGCAAGATCATTCTAAGAAGGATGCCAAAGAAATCAAATTTTTTACTGAATATGGTGATGCTAATCGATATAAGATTCTTGAAGTTGTTGGAAAGGGAAGTTACGGAGTTGTTTGTTCGGCTATCGACATGCAAACCAGGGAGAAAGTTGCAATAAAGAGAATTCATGGTATTTTTGACCATGCATCGGATGCTATTCGAATCCTTCGTGAAGTTAAGTTGCTTAGATTGTTGCGGCATCCTGATATAGTTGACATCAAGAACATTATGTTACCACCTTCGAAAAGTGATTTTAAGGACATTTATGTGGTTTTTGAGCTTATGGAGTCTGATCTTCATCAAGTTATTAAAGCGAACGATGACTTGACCCGTGAACATCATCAGTTCTTCCTCTATCAAATGCTACGTGCATTGAAATTCATGCATACAGCCAATGTTTATCATAGAGATCTGAAGCCGAAGAATATATTGGCTAATGCCAATTGCAAGCTTAAAATTTGTGATTTTGGACTTGCAAGAGTTGCTTTCAGTGACACACCAACCACAATATTTTGGACAGACTATGTTGCTACTCGATGGTATAGAGCTCCGGAGCTGTGTGGATCGTTCTGTTCTAAGTATACTCCCGCAATAGATATTTGGAGCATCGGCTGCATATTTGCTGAGGTTTTGATGGGGAAGCCACTGTTTCCGGGTAAAAGCGTTGCTCATCAATTGGATTTGATTACCGATCTTCTCGGGACTCCCTCATTGGAAACCATTGCAGGAGTTCGGAATGAAAAGGCCAGGAAACATTTGACAGAAATGAAAAGGAAATCTCCAGCGCCATTTTCACAAAGATTTCCCTATGTGGATCCTTCCGCCATCCGCTTATTGCAAAGACTATTGGCATTTGATCCGAAGGATCGACCATCCGCCGTGGAGGCTCTGGCTGATCCTTACTTTAAAGGCCTAGCCAAAGTTGAAAGAGAGCCTTCTTGTCAGCCAATCTCAAGATCCGAATTCGAGTTTGAGAGACGAAAATTAACTAAGGATGATGTAAGGGAACTATTATACAGAGAAATATTAGAATATCATCCTCAAATACGTCAAGATTATTTGATTGGATTAGAGACTACAAAGTTCCTCTATCCCAGTGTTACTCGTCATTTTAAAAGCCAATTCACCTACCACAAGGAGAATGGCGGTAAAAGCGCACCGGTTTTGCCTCTAGAACGGAAACACTTCTCCCTCCCACGGTCCACTGTTTACACAAATGTGGTTTCACCTGAACGTGAGCCGGTTCGGCGAAATCCGAAAGTCTCTAACAACAACATGGGATTACCTGATAGAAAATTTGGGAATCCATCAAAGGCTCATCCTCCACCTAAAGTGCCTACTGGACGAGTTTCGGGGCCCGTCCTCCCGTACGAGAACAGAAACATAAAGGAAGTTTATTCGAGACTAACGTCGCAAATTAGAGGCTTGGATTTGTGA | 1479 | 41.85 | MPQDHSKKDAKEIKFFTEYGDANRYKILEVVGKGSYGVVCSAIDMQTREKVAIKRIHGIFDHASDAIRILREVKLLRLLRHPDIVDIKNIMLPPSKSDFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFCSKYTPAIDIWSIGCIFAEVLMGKPLFPGKSVAHQLDLITDLLGTPSLETIAGVRNEKARKHLTEMKRKSPAPFSQRFPYVDPSAIRLLQRLLAFDPKDRPSAVEALADPYFKGLAKVEREPSCQPISRSEFEFERRKLTKDDVRELLYREILEYHPQIRQDYLIGLETTKFLYPSVTRHFKSQFTYHKENGGKSAPVLPLERKHFSLPRSTVYTNVVSPEREPVRRNPKVSNNNMGLPDRKFGNPSKAHPPPKVPTGRVSGPVLPYENRNIKEVYSRLTSQIRGLDL | 492 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 4381399 | 4387687 | + | Sed0021077.1 | Sed13g0648 | 734158 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g0648 | 492 | ProSitePatterns | Protein kinases ATP-binding region signature. | 31 | 54 | IPR017441 | GO:0005524(InterPro) | |
Sed13g0648 | 492 | ProSiteProfiles | Protein kinase domain profile. | 25 | 316 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed13g0648 | 492 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 22 | 357 | IPR050117 | GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER) | |
Sed13g0648 | 492 | SUPERFAMILY | Protein kinase-like (PK-like) | 20 | 320 | IPR011009 | - | |
Sed13g0648 | 492 | ProSitePatterns | MAP kinase signature. | 60 | 163 | IPR003527 | GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed13g0648 | 492 | FunFam | Mitogen-activated protein kinase | 340 | 362 | - | - | |
Sed13g0648 | 492 | MobiDBLite | consensus disorder prediction | 423 | 468 | - | - | |
Sed13g0648 | 492 | SMART | serkin_6 | 25 | 316 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed13g0648 | 492 | Gene3D | Phosphorylase Kinase; domain 1 | 40 | 362 | - | - | |
Sed13g0648 | 492 | Pfam | Protein kinase domain | 25 | 316 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed13g0648 | 492 | FunFam | Mitogen-activated protein kinase | 111 | 339 | - | - | |
Sed13g0648 | 492 | Gene3D | Transferase(Phosphotransferase) domain 1 | 111 | 339 | - | - | |
Sed13g0648 | 492 | FunFam | Mitogen-activated protein kinase | 14 | 119 | - | - | |
Sed13g0648 | 492 | CDD | STKc_TDY_MAPK | 24 | 361 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g3269 | Sed-Chr5:42114259 | Sed13g0648 | Sed-Chr13:4381399 | 4.30E-199 | dispersed | |
Sed05g3270 | Sed-Chr5:42114259 | Sed13g0648 | Sed-Chr13:4381399 | 5.70E-199 | dispersed | |
Sed08g0397 | Sed-Chr8:2389941 | Sed13g0648 | Sed-Chr13:4381399 | 9.60E-178 | dispersed | |
Sed08g2751 | Sed-Chr8:39187253 | Sed13g0648 | Sed-Chr13:4381399 | 2.40E-129 | dispersed | |
Sed12g2110 | Sed-Chr12:31783363 | Sed13g0648 | Sed-Chr13:4381399 | 2.10E-178 | dispersed | |
Sed13g0648 | Sed-Chr13:4381399 | Sed13g0650 | Sed-Chr13:4391020 | 1.30E-182 | dispersed | |
Sed13g0648 | Sed-Chr13:4381399 | Sed13g0649 | Sed-Chr13:4381399 | 1.60E-244 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80077 | PF00069 | Pkinase | 8.10E-65 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g0648 | - | - | - | 0.0 |