Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0648 ATGCCGCAAGATCATTCTAAGAAGGATGCCAAAGAAATCAAATTTTTTACTGAATATGGTGATGCTAATCGATATAAGATTCTTGAAGTTGTTGGAAAGGGAAGTTACGGAGTTGTTTGTTCGGCTATCGACATGCAAACCAGGGAGAAAGTTGCAATAAAGAGAATTCATGGTATTTTTGACCATGCATCGGATGCTATTCGAATCCTTCGTGAAGTTAAGTTGCTTAGATTGTTGCGGCATCCTGATATAGTTGACATCAAGAACATTATGTTACCACCTTCGAAAAGTGATTTTAAGGACATTTATGTGGTTTTTGAGCTTATGGAGTCTGATCTTCATCAAGTTATTAAAGCGAACGATGACTTGACCCGTGAACATCATCAGTTCTTCCTCTATCAAATGCTACGTGCATTGAAATTCATGCATACAGCCAATGTTTATCATAGAGATCTGAAGCCGAAGAATATATTGGCTAATGCCAATTGCAAGCTTAAAATTTGTGATTTTGGACTTGCAAGAGTTGCTTTCAGTGACACACCAACCACAATATTTTGGACAGACTATGTTGCTACTCGATGGTATAGAGCTCCGGAGCTGTGTGGATCGTTCTGTTCTAAGTATACTCCCGCAATAGATATTTGGAGCATCGGCTGCATATTTGCTGAGGTTTTGATGGGGAAGCCACTGTTTCCGGGTAAAAGCGTTGCTCATCAATTGGATTTGATTACCGATCTTCTCGGGACTCCCTCATTGGAAACCATTGCAGGAGTTCGGAATGAAAAGGCCAGGAAACATTTGACAGAAATGAAAAGGAAATCTCCAGCGCCATTTTCACAAAGATTTCCCTATGTGGATCCTTCCGCCATCCGCTTATTGCAAAGACTATTGGCATTTGATCCGAAGGATCGACCATCCGCCGTGGAGGCTCTGGCTGATCCTTACTTTAAAGGCCTAGCCAAAGTTGAAAGAGAGCCTTCTTGTCAGCCAATCTCAAGATCCGAATTCGAGTTTGAGAGACGAAAATTAACTAAGGATGATGTAAGGGAACTATTATACAGAGAAATATTAGAATATCATCCTCAAATACGTCAAGATTATTTGATTGGATTAGAGACTACAAAGTTCCTCTATCCCAGTGTTACTCGTCATTTTAAAAGCCAATTCACCTACCACAAGGAGAATGGCGGTAAAAGCGCACCGGTTTTGCCTCTAGAACGGAAACACTTCTCCCTCCCACGGTCCACTGTTTACACAAATGTGGTTTCACCTGAACGTGAGCCGGTTCGGCGAAATCCGAAAGTCTCTAACAACAACATGGGATTACCTGATAGAAAATTTGGGAATCCATCAAAGGCTCATCCTCCACCTAAAGTGCCTACTGGACGAGTTTCGGGGCCCGTCCTCCCGTACGAGAACAGAAACATAAAGGAAGTTTATTCGAGACTAACGTCGCAAATTAGAGGCTTGGATTTGTGA 1479 41.85 MPQDHSKKDAKEIKFFTEYGDANRYKILEVVGKGSYGVVCSAIDMQTREKVAIKRIHGIFDHASDAIRILREVKLLRLLRHPDIVDIKNIMLPPSKSDFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFCSKYTPAIDIWSIGCIFAEVLMGKPLFPGKSVAHQLDLITDLLGTPSLETIAGVRNEKARKHLTEMKRKSPAPFSQRFPYVDPSAIRLLQRLLAFDPKDRPSAVEALADPYFKGLAKVEREPSCQPISRSEFEFERRKLTKDDVRELLYREILEYHPQIRQDYLIGLETTKFLYPSVTRHFKSQFTYHKENGGKSAPVLPLERKHFSLPRSTVYTNVVSPEREPVRRNPKVSNNNMGLPDRKFGNPSKAHPPPKVPTGRVSGPVLPYENRNIKEVYSRLTSQIRGLDL 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4381399 4387687 + Sed0021077.1 Sed13g0648 734158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0648 492 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
Sed13g0648 492 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0648 492 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 22 357 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed13g0648 492 SUPERFAMILY Protein kinase-like (PK-like) 20 320 IPR011009 -
Sed13g0648 492 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0648 492 FunFam Mitogen-activated protein kinase 340 362 - -
Sed13g0648 492 MobiDBLite consensus disorder prediction 423 468 - -
Sed13g0648 492 SMART serkin_6 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0648 492 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Sed13g0648 492 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0648 492 FunFam Mitogen-activated protein kinase 111 339 - -
Sed13g0648 492 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Sed13g0648 492 FunFam Mitogen-activated protein kinase 14 119 - -
Sed13g0648 492 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3269 Sed-Chr5:42114259 Sed13g0648 Sed-Chr13:4381399 4.30E-199 dispersed
Sed05g3270 Sed-Chr5:42114259 Sed13g0648 Sed-Chr13:4381399 5.70E-199 dispersed
Sed08g0397 Sed-Chr8:2389941 Sed13g0648 Sed-Chr13:4381399 9.60E-178 dispersed
Sed08g2751 Sed-Chr8:39187253 Sed13g0648 Sed-Chr13:4381399 2.40E-129 dispersed
Sed12g2110 Sed-Chr12:31783363 Sed13g0648 Sed-Chr13:4381399 2.10E-178 dispersed
Sed13g0648 Sed-Chr13:4381399 Sed13g0650 Sed-Chr13:4391020 1.30E-182 dispersed
Sed13g0648 Sed-Chr13:4381399 Sed13g0649 Sed-Chr13:4381399 1.60E-244 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80077 PF00069 Pkinase 8.10E-65 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0648 - - - 0.0