Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0649 ATGCCGCAAGATCATTCTAAGAAGGATGCCAAAGAAATCAAATTTTTTACTGAATATGGTGATGCTAATCGATATAAGATTCTTGAAGTTGTTGGAAAGGGAAGTTACGGAGTTGTTTGTTCGGCTATCGACATGCAAACCAGGGAGAAAGTTGCAATAAAGAGAATTCATGGTATTTTTGACCATGCATCGGATGCTATTCGAATCCTTCGTGAAGTTAAGTTGCTTAGATTGTTGCGGCATCCTGATATAGTTGACATCAAGAACATTATGTTACCACCTTCGAAAAGTGATTTTAAGGACATTTATGTGGTTTTTGAGCTTATGGAGTCTGATCTTCATCAAGTTATTAAAGCGAACGATGACTTGACCCGTGAACATCATCAGTTCTTCCTCTATCAAATGCTACGTGCATTGAAATTCATGCATACAGCCAATGTTTATCATAGAGATCTGAAGCCGAAGAATATATTGGCTAATGCCAATTGCAAGCTTAAAATTTGTGATTTTGGACTTGCAAGAGTTGCTTTCAGTGACACACCAACCACAATATTTTGGACAGACTATGTTGCTACTCGATGGTATAGAGCTCCGGAGCTGTGTGGATCGTTCTGTTCTAAGTATACTCCCGCAATAGATATTTGGAGCATCGGCTGCATATTTGCTGAGGTTTTGATGGGGAAGCCACTGTTTCCGGGTAAAAGCGTTGCTCATCAATTGGATTTGATTACCGATCTTCTCGGGACTCCCTCATTGGAAACCATTGCAGGAGTTCGGAATGAAAAGGCCAGGAAACATTTGACAGAAATGAAAAGGAAATCTCCAGCGCCATTTTCACAAAGATTTCCCTATGTGGATCCTTCCGCCATCCGCTTATTGCAAAGACTATTGGCATTTGATCCGAAGGATCGACCATCCGCCGTGGAGGCTCTGGCTGATCCTTACTTTAAAGGCCTAGCCAAAGTTGAAAGAGAGCCTTCTTGTCAGCCAATCTCAAGATCCGAATTCGAGTTTGAGAGACGAAAATTAACTAAGGATGATGTAAGGGAACTATTATACAGAGAAATATTAGAATATCATCCTCAAATACGTCAAGATTATTTGATTGGATTAGAGACTACAAAGTTCCTCTATCCCAGTGTTACTCGTCATTTTAAAAGCCAATTCACCTACCACAAGGAGAATGGCGGTAAAAGCGCACCGGTTTTGCCTCTAGAACGGAAACACTTCTCCCTCCCACGGTATGCAGTTACAAGTACTTCAGGCCCGTTTGATAACCATTTGATTTTTAAAATTAAATCTTATTTTTACTCAATTTTCCTTCCATGTGTTCCATCTTTCCTTAAGAAAGTACTTGAATACTAA 1365 40.0 MPQDHSKKDAKEIKFFTEYGDANRYKILEVVGKGSYGVVCSAIDMQTREKVAIKRIHGIFDHASDAIRILREVKLLRLLRHPDIVDIKNIMLPPSKSDFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFCSKYTPAIDIWSIGCIFAEVLMGKPLFPGKSVAHQLDLITDLLGTPSLETIAGVRNEKARKHLTEMKRKSPAPFSQRFPYVDPSAIRLLQRLLAFDPKDRPSAVEALADPYFKGLAKVEREPSCQPISRSEFEFERRKLTKDDVRELLYREILEYHPQIRQDYLIGLETTKFLYPSVTRHFKSQFTYHKENGGKSAPVLPLERKHFSLPRYAVTSTSGPFDNHLIFKIKSYFYSIFLPCVPSFLKKVLEY 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4381399 4387687 + Sed0021077.2 Sed13g0649 734159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0649 454 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
Sed13g0649 454 FunFam Mitogen-activated protein kinase 111 339 - -
Sed13g0649 454 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0649 454 FunFam Mitogen-activated protein kinase 340 362 - -
Sed13g0649 454 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 22 357 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed13g0649 454 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0649 454 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Sed13g0649 454 SMART serkin_6 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0649 454 FunFam Mitogen-activated protein kinase 14 119 - -
Sed13g0649 454 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0649 454 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Sed13g0649 454 SUPERFAMILY Protein kinase-like (PK-like) 20 320 IPR011009 -
Sed13g0649 454 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0649 Sed-Chr13:4381399 Sed13g1026 Sed-Chr13:8384476 2.40E-85 dispersed
Sed13g0648 Sed-Chr13:4381399 Sed13g0649 Sed-Chr13:4381399 1.60E-244 tandem
Sed13g0649 Sed-Chr13:4381399 Sed13g0650 Sed-Chr13:4391020 3.40E-169 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80078 PF00069 Pkinase 6.40E-65 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0649 - - - 0.0