Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0650 ATGGTGAATGTGGGTGGCTTTGTTCTGAAAATTCTGTTTCTATTACCGGAAAGAGGGGTATTTTTTGCAGGGGTCAGGGATTTTGAGATGAAAAGGGAAGGATTCTTTGATGATGAAAATTTGGATGGTAAAGAAGTCGATTTTTTTACTGAATATGGGGATGCTAATAGATACCAGATTCTTGAAATTGTTGGAAGGGGAAGTTATGGAGTTGTTTGTTCGGCCATTGACATGCAAACCAATGAGAAAGTTGCAATAAAGAGAATTGATGGTATTTTTAACCATAAAACCGATGCCATTCGAATCCTTCGTGAAGTGAAGTTGCTTAGATTGATGAAGCATCCTGATATAGTTGAGATCAAGAACATTATGTTACCACCTTCTAAAAATGATTTTAAGGACATTTATTTGGTTTTTGAGCTCATGGAATCTGATCTTCATCAAGTTATTAAAGCCAATGATGATTTGACTCATGAACATCATCAGTTCTTCCTCTACCAAATGCTATGTGCATTGAAATTCATGCATACAGCAAATGTGTATCATAGAGATCTGAAGCCGAGGAATATATTGGCAAATGCCAATTGCAAGCTTAAAATCTGTGATTTTGGACTGGCAAGAGTTGCTTTTGACAGCGACAGCGTAGTAGCCAGAATACTTTGGACAGACTATGTTGCTACTAGATGGTACAGAGCTCCAGAGCTGTGTGGATCGACGTGGTCTACGAGGCCCATCGGCTGCATATTTGGTGAGATTTTGATGGGGAAGCCACTGTTTCAGGGTAAAAGCATTGTCAATCAATTGGAGTTGATTACGGATCTTCTCGGGAATCCCTCATCCGAAACCATTGCAAGCATTCGGAACGAGTTGGCCAGGAGATGTTTGACAGAAATGAAGAAGAAATCTCCAGTGCCATTTTCACAACAGTTTCCCAATGCAGACCCTTCAGCCATCCGCTTATTGCAAAGACTATTAGCTCTTGCTGATCCTTACTTTAAGGGCCTAGCCAAAGTTGAAAGAGAGCCTTCCTGTCAGCCAATCTCACAATCCGAATTCGAGTTCGAGTCTATGAGTCGGAGATTAACCAAGGATGATATAAGAGAACTATTATACAGAGAAATATTAGAATATCATCCTCTAATTCTTTATTATACTATTAATATGAAGCCCGTTAGGCCCGTTCGAAATATGACATTTTTCTTATCATTACTCAGTGTTTCAGACCACTTTCAAAGCCAATTCATCGACGATGACGACAAGGAGAATGACGGTAAAAGCGCCCCGGTTTTGCCTCTAGAACGGAAACACTTCTCCCTTCCACGGTCCACTGTTTACACAAATGTGGTTTCACCGGAACCCGAACCGGTTCGGCGAAATCTCGAAGTCTCTAATAACAACATGGGATCACCATTTGTTCTATATTAG 1425 40.42 MVNVGGFVLKILFLLPERGVFFAGVRDFEMKREGFFDDENLDGKEVDFFTEYGDANRYQILEIVGRGSYGVVCSAIDMQTNEKVAIKRIDGIFNHKTDAIRILREVKLLRLMKHPDIVEIKNIMLPPSKNDFKDIYLVFELMESDLHQVIKANDDLTHEHHQFFLYQMLCALKFMHTANVYHRDLKPRNILANANCKLKICDFGLARVAFDSDSVVARILWTDYVATRWYRAPELCGSTWSTRPIGCIFGEILMGKPLFQGKSIVNQLELITDLLGNPSSETIASIRNELARRCLTEMKKKSPVPFSQQFPNADPSAIRLLQRLLALADPYFKGLAKVEREPSCQPISQSEFEFESMSRRLTKDDIRELLYREILEYHPLILYYTINMKPVRPVRNMTFFLSLLSVSDHFQSQFIDDDDKENDGKSAPVLPLERKHFSLPRSTVYTNVVSPEPEPVRRNLEVSNNNMGSPFVLY 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4391020 4396669 + Sed0008233.1 Sed13g0650 734160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0650 474 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 55 375 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed13g0650 474 Gene3D Transferase(Phosphotransferase) domain 1 144 357 - -
Sed13g0650 474 Pfam Protein kinase domain 58 299 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0650 474 ProSitePatterns MAP kinase signature. 93 196 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0650 474 SMART serkin_6 58 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0650 474 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524(InterPro)
Sed13g0650 474 FunFam Mitogen-activated protein kinase 48 152 - -
Sed13g0650 474 ProSiteProfiles Protein kinase domain profile. 58 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g0650 474 SUPERFAMILY Protein kinase-like (PK-like) 54 336 IPR011009 -
Sed13g0650 474 Gene3D Phosphorylase Kinase; domain 1 73 379 - -
Sed13g0650 474 FunFam Mitogen-activated protein kinase 142 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0648 Sed-Chr13:4381399 Sed13g0650 Sed-Chr13:4391020 1.30E-182 dispersed
Sed13g0650 Sed-Chr13:4391020 Sed13g1026 Sed-Chr13:8384476 7.20E-77 dispersed
Sed13g0649 Sed-Chr13:4381399 Sed13g0650 Sed-Chr13:4391020 3.40E-169 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80079 PF00069 Pkinase 2.00E-50 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0650 - - - 0.0