Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0672 ATGGTGGAGGAAGTGAAACTATTGGATTTTTGGCCAAGCATGTTCGGGATGCGAGTCCGAGTAGCCCTAGCCGTGAAGGGCGTGGGCTACGAATATGTGGAAGAAGATCTAAGCAACAAGAGCCATTTGCTTGTGCATTTGAACCCAATCCACAAGAAGACTCCTGTTCTTATCCATAATGGAAACCCCATTTGTGAATCTTCCATTATTGTTCAATATATTGATGAAGTTTGGAATGATAGAGATCCTTTGTTGCCATCTGATCCTTATCAAAGGGCTCAGGCAAGATTTTGGGTGGATTTCATTGATAAGAAGCTTTATGATGCTGGGAAGAAGCTATACTTAGGAAGGAAAGGAGAAGAGCAAGATGCAGGTAAGAAAGAGCTGATAGGAATTTTGAAGCAACTTGAAGAAGTTATGGGCCAAAAGCCTTACTTTGGAGGTGATTGTTTGGGATTTATAGACATTGCTTTGATTGGATTCCACACTTGGTTTTATAGCTTTGAAACCATTGGAAGCTTCAACATTGAGGCTGAATGTCCAAAAATAATGGCTTGGGTGAAAAAATGTCTCCAAAATGAAAGTGTTTCAAACATGTTTGGGATGAGGGTTAGGATAGCCCTAGCCGAGAAAGGAGTGCCCTACGAGTACGTAGAGGAAGATCTTAGGAACAAGAGCCCTTTGCTGTTGGAGATGAACCCTGTAAACAAACAGATCCCTGTCCTTGTCCACCATGGGAAACCTGTTTGTGAATCCGCCATTATTGTTCACTATATTGATGAGGTTTGGAATCATCAGCCTCATTTCCTGCCGTCCGATCCTTATCTTCGAGCTCAGGCCAGGTTTTGGGTGGATTTTATTGATAAGAAGTTCTATATTTCAGCAAGGAAGATATGGGGAGCCAAGGAAGAGAAAGAAGCAGGCAAGAAAGAGGTGATGGAAATTTTGAAGCAACTTGAACAAGTTCTTGGGGAAAAGCCTTACTTTGGAGGGGACAATTTGGGAATTGTAGACATTGCTTTGATTGGGTACTACCCTTGGTTTTATACCTATGAAACCATTGGGAACTTAAACTTTGAGGCTGAGTGTCCCAAGATTGTAGCTTGGGCAAAGAGGTGCTCCCAAAAGGAAAGTGTTTCAAAGTCTTTGGTTGACCCTAAAAAGGTTTATGACTTTGTGCTTGAATTGAGGAAAGCTCTTGTTGTTAAAAATATGTTTTTGTTTTTCAAATTTGACTATGAAATCAAATATAATGTTTGTTTAAGAGAGAAAATATATCATTGA 1284 40.42 MVEEVKLLDFWPSMFGMRVRVALAVKGVGYEYVEEDLSNKSHLLVHLNPIHKKTPVLIHNGNPICESSIIVQYIDEVWNDRDPLLPSDPYQRAQARFWVDFIDKKLYDAGKKLYLGRKGEEQDAGKKELIGILKQLEEVMGQKPYFGGDCLGFIDIALIGFHTWFYSFETIGSFNIEAECPKIMAWVKKCLQNESVSNMFGMRVRIALAEKGVPYEYVEEDLRNKSPLLLEMNPVNKQIPVLVHHGKPVCESAIIVHYIDEVWNHQPHFLPSDPYLRAQARFWVDFIDKKFYISARKIWGAKEEKEAGKKEVMEILKQLEQVLGEKPYFGGDNLGIVDIALIGYYPWFYTYETIGNLNFEAECPKIVAWAKRCSQKESVSKSLVDPKKVYDFVLELRKALVVKNMFLFFKFDYEIKYNVCLREKIYH 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4630270 4641242 + Sed0021659.1 Sed13g0672 734182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0672 427 FunFam Tau class glutathione S-transferase 1 87 - -
Sed13g0672 427 SUPERFAMILY Thioredoxin-like 5 107 IPR036249 -
Sed13g0672 427 FunFam Glutathione S-transferase U20 273 403 - -
Sed13g0672 427 SFLD Main (cytGST) 3 198 - -
Sed13g0672 427 Gene3D - 273 403 - -
Sed13g0672 427 CDD GST_C_Tau 274 396 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Sed13g0672 427 SUPERFAMILY Thioredoxin-like 199 267 IPR036249 -
Sed13g0672 427 SUPERFAMILY GST C-terminal domain-like 76 200 IPR036282 -
Sed13g0672 427 SUPERFAMILY GST C-terminal domain-like 261 398 IPR036282 -
Sed13g0672 427 SFLD Main.3: Omega- and Tau-like 3 198 IPR045073 -
Sed13g0672 427 SFLD Main.3: Omega- and Tau-like 198 402 IPR045073 -
Sed13g0672 427 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Sed13g0672 427 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 273 392 IPR010987 -
Sed13g0672 427 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Sed13g0672 427 Pfam Glutathione S-transferase, N-terminal domain 197 261 IPR004045 -
Sed13g0672 427 Pfam Glutathione S-transferase, C-terminal domain 300 376 IPR004046 -
Sed13g0672 427 Pfam Glutathione S-transferase, C-terminal domain 118 192 IPR004046 -
Sed13g0672 427 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 228 IPR010987 -
Sed13g0672 427 SFLD Glutathione Transferase (cytosolic) 198 402 IPR040079 -
Sed13g0672 427 Gene3D - 87 195 - -
Sed13g0672 427 CDD GST_N_Tau 199 263 - -
Sed13g0672 427 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 197 393 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Sed13g0672 427 CDD GST_C_Tau 89 196 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Sed13g0672 427 Coils Coil 302 322 - -
Sed13g0672 427 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 188 267 IPR004045 -
Sed13g0672 427 FunFam Tau class glutathione S-transferase 188 271 - -
Sed13g0672 427 Gene3D Glutaredoxin 196 272 - -
Sed13g0672 427 Gene3D Glutaredoxin 1 86 - -
Sed13g0672 427 CDD GST_N_Tau 5 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0887 Sed-Chr7:6397936 Sed13g0672 Sed-Chr13:4630270 4.20E-153 dispersed
Sed12g0427 Sed-Chr12:2570650 Sed13g0672 Sed-Chr13:4630270 1.10E-25 dispersed
Sed13g0672 Sed-Chr13:4630270 Sed14g0672 Sed-Chr14:6755120 1.80E-39 dispersed
Sed13g0672 Sed-Chr13:4630270 Sed13g0673 Sed-Chr13:4642427 6.70E-74 tandem
Sed13g0672 Sed-Chr13:4630270 Sed07g0886 Sed-Chr7:6394236 2.40E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0672 K00799 - csv:101217848 320.472