Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g0673 | ATGGCGGAGGACGAAGTGATACTGTTGGATTGTTGGGGCAGCATGTTTGGGATGCGAGTTAGAATAGCCCTAGCCGAGAAGGGCGTGTCCTACGAATATGTAGAGCAAGATCTCAACAACAAGAGCCCTTTGCTTCTCCAGATGAACCCAATCTACAAGCAGATCCCTGTTCTTATCCATAATGGAAAACCCATTTGCCAATCTTCCATTATTGTGCAGTATATCGATGAAATCTGGAAGGGCAAAGCTCCTCTGCTGCCGTCCGATCCTTTTCAGAAAGCTCAGGCCAGATTTTGGGTGGATTTCATCGACCACAAGCTTTATGTTGCAACTAAGAAGACATGGGGCAGCAAGGGAGAGGAGCAGGAAGCAGGCAAGAAGGAGCTGATAGAAAATTTGAAGCAACTTGAAGAAGTTATTGGCCAAAAGCCTTACTTTGGAGGTGAGTGCTTGGGATTTGTAGACATTGCTTTGATTGGATTCTACCCTTGGTTTTATACCTATGAAACCATTGGGAACTTCAGCATTTAG | 531 | 45.2 | MAEDEVILLDCWGSMFGMRVRIALAEKGVSYEYVEQDLNNKSPLLLQMNPIYKQIPVLIHNGKPICQSSIIVQYIDEIWKGKAPLLPSDPFQKAQARFWVDFIDHKLYVATKKTWGSKGEEQEAGKKELIENLKQLEEVIGQKPYFGGECLGFVDIALIGFYPWFYTYETIGNFSI | 176 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 4642427 | 4645370 | + | Sed0019782.1 | Sed13g0673 | 734183 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g0673 | 176 | Coils | Coil | 119 | 139 | - | - | |
Sed13g0673 | 176 | PANTHER | GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING | 5 | 174 | IPR045073 | GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER) | |
Sed13g0673 | 176 | Gene3D | Glutaredoxin | 1 | 88 | - | - | |
Sed13g0673 | 176 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 4 | 83 | IPR004045 | - | |
Sed13g0673 | 176 | SUPERFAMILY | Thioredoxin-like | 6 | 108 | IPR036249 | - | |
Sed13g0673 | 176 | SUPERFAMILY | GST C-terminal domain-like | 77 | 176 | IPR036282 | - | |
Sed13g0673 | 176 | Gene3D | - | 89 | 176 | - | - | |
Sed13g0673 | 176 | SFLD | Glutathione Transferase (cytosolic) | 2 | 175 | IPR040079 | - | |
Sed13g0673 | 176 | Pfam | Glutathione S-transferase, C-terminal domain | 122 | 168 | - | - | |
Sed13g0673 | 176 | Pfam | Glutathione S-transferase, N-terminal domain | 6 | 77 | IPR004045 | - | |
Sed13g0673 | 176 | CDD | GST_N_Tau | 6 | 79 | - | - | |
Sed13g0673 | 176 | FunFam | Tau class glutathione S-transferase | 1 | 88 | - | - | |
Sed13g0673 | 176 | SFLD | Main.3: Omega- and Tau-like | 2 | 175 | IPR045073 | - | |
Sed13g0673 | 176 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 89 | 176 | IPR010987 | - | |
Sed13g0673 | 176 | CDD | GST_C_Tau | 90 | 176 | IPR045074 | GO:0004364(InterPro)|GO:0006749(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0886 | Sed-Chr7:6394236 | Sed13g0673 | Sed-Chr13:4642427 | 1.10E-80 | dispersed | |
Sed13g0673 | Sed-Chr13:4642427 | Sed14g0672 | Sed-Chr14:6755120 | 1.20E-37 | dispersed | |
Sed13g0672 | Sed-Chr13:4630270 | Sed13g0673 | Sed-Chr13:4642427 | 6.70E-74 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g0673 | K00799 | - | csv:101218562 | 289.656 |