Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0711 ATGCTCCAAAGCTTAATCCCTCCCAATCCCATGAAATCCAAACGCCCCGACAACTCCCCCGCCGACCACCCTTCTCCCAAACGCCTCAATTCCAATCCTCAAACCCATTTAGCCGCCCTTGACGGCGGCGACCACGGCGGCGACGGCGACGAATCCTCTGGCCTGAGGCTCCTCGGCCTTCTCCTCCAATGCGCCGAGTGCGTCGCCATGGACCACCTCCAAGAAGCCTCCGATCTCTTGCCGGAAATCTCCGAGCTCTCCTCTCCGTTCGGCTCCTCGCCGGAGCGCGTCGGCGCGTACTTCGCCCACGCGCTTCAGGCGAGAGTGATAACCTCCTGCTTGGGAACCTACTCGCCGTTGACCATCAGAACCCAGAATCAGCAGCGGATTTTCAACGCCCTTCAATCCTACAACTCCATCAGCCCGTTGATCAAATTCTCCCACTTCACCGCCAATCAGGCCATCTTCCAGGCGTTGGACGGCGAGGATCGCGTCCACGTCATCGACCTCGACGTGATGCAGGGGCTCCAATGGCCAGGATTGTTCCACATCCTCGCTTCCCGGCCGAGGAAAATCCAGTCCCTACGAATCTCCGGCTTCGGCTCCTCCGCCGACCTCCTCCACTCCACCGGCCGGCGACTCGCCGACTTCGCCACCGCCCTCAACCTCCCCTTCGAGTTTCACCCAATGGAGGGCAAGATCGGGAACATAAAAAACCCGTCGGAGCTGAACCCACGCGCCGGCGAGGCCCTCGTCGTGCACTGGATGCACCACTGCCTGTACGACGTCACCGGCGGCGACCTCGAGGCCGTGAAACTCCTCTCGGCGCTGAAACCCAAACTAATCACCGTGGTGGAACAGGATCTGAACCACGGCGGGAATTTCCTGAGCCGGTTCGTGGAGGCGCTGCATTACTACAGCGCGTTGTTCGACGCGCTTGGGGACAGCTTGGGGGCTGACAGCGTGGAGCGCCACGTGGTGGAGCAGCAGCTGTTTGGCTGCGAGATTAAGAACATCGTGGCCGTGGGTGGGCCCAAGCGGACCGGGGAGGTCAAGGTGGACCGGTGGGGGGAGGAGTTCGGCCGGGCCGGGTTCAGACCGGTGTCGCTCGGGGGAAACCCGGCGGCTCAGGCCGGGCTGCTTCTGGGGATGTTCCCTTGGAAAGGGTATACCCTTGTGGAGGAAAATGGGTGCCTTAAACTTGGCTGGAAGGATCTTTCTCTTCTGACTGCCTCTGCTTGGCAGCCATTTGAGGAGCTTGGTGAGATTTGA 1272 61.24 MLQSLIPPNPMKSKRPDNSPADHPSPKRLNSNPQTHLAALDGGDHGGDGDESSGLRLLGLLLQCAECVAMDHLQEASDLLPEISELSSPFGSSPERVGAYFAHALQARVITSCLGTYSPLTIRTQNQQRIFNALQSYNSISPLIKFSHFTANQAIFQALDGEDRVHVIDLDVMQGLQWPGLFHILASRPRKIQSLRISGFGSSADLLHSTGRRLADFATALNLPFEFHPMEGKIGNIKNPSELNPRAGEALVVHWMHHCLYDVTGGDLEAVKLLSALKPKLITVVEQDLNHGGNFLSRFVEALHYYSALFDALGDSLGADSVERHVVEQQLFGCEIKNIVAVGGPKRTGEVKVDRWGEEFGRAGFRPVSLGGNPAAQAGLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPFEELGEI 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4944499 4946280 + Sed0006631.1 Sed13g0711 734221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0711 423 Pfam GRAS domain family 59 415 IPR005202 -
Sed13g0711 423 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 49 414 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0090610(PANTHER)
Sed13g0711 423 ProSiteProfiles GRAS family profile. 48 415 IPR005202 -
Sed13g0711 423 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0711 Sed-Chr13:4944499 Sed14g0535 Sed-Chr14:5374746 2.20E-125 dispersed
Sed13g0711 Sed-Chr13:4944499 Sed08g2860 Sed-Chr8:39812224 1.20E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40364 PF03514 GRAS 9.20E-112 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0711 K27742 - csv:101212169 668.307