Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed13g0726 | ATGGCAATGGCGGCCACTTCCCTTTCGAATCTTCCTTCTGCTGTGTTCTTCCATGGAAATCTGCACAGAAATGAAATTGGGTTTGTGGGTATGACGAAACAACCCGCCAAGTATCTTAAATCTAATCTTAGAGGTTCTTTTGTTAGATGTCAATCAACTCAAGTTGATGAACCGAAAACAAAGAGAAATCTACTGGACAATGCAAGCAATCTTCTAACTAATTTGTTAAGTGGTGGAAATCTGGGATCTATGCCAACAGCTGAAGGTGCAGTCTCTGATTTGTTCGGTCGCCCACTCTTTTTTGCACTATATGATTGGTTCTTAGAGCATGGATCTGTTTATAAACTTGCCTTTGGACCTAAAGCCTTTGTCGTCGTATCAGATCCAATTGTGGCAAGATATATTCTTCGAGAAAACGTATTTGGTTATGACAAGGGAGTGCTTGCTGATATTCTAGAACCAATAATGGGTAAAGGACTAATACCAGCTGACCTTGACACTTGGAAGCAGAGGAGACGAGTTATAGCTCCTGGATTCCATGCCTTATACTTGGAGGCTATGGCCAAAGTGTTTACTGATTGTTCAGAACGATCAATTCTGAAATTGGAGAAGCTTTTAGGAGAAGGTGAACTTCAGAAAGACAGAACCATTGAGTTGGATATGGAAGCAGAGTTTTCAAGTTTGGCTCTTGATATCATTGGACTTGGTGTTTTCAACTTTGATTTTGGTTCTGTAACTAAAGAATCCCCCGTGATTAAGGCTGTATATGGAACCCTTTTTGAAGCAGAGCATAGATCAACTTTCTATATTCCATATTGGAAAGTACCTTTGGCAAGGTGGATAGTCCCAAGGCAGCGTAAATTCCATAGTGACCTTAAGGTTATTAATGACTGTCTTGATGGTCTGATACGAAATGCTAGAGAAACACGAGAGGAAGCAGATGTTGAGAAGTTGCAGCAAAGAGATTATTCAAATCTCAAGGATGCCAGTCTCTTGCGTTTCTTAGTTGATATGCGGGGAGCTGATGTCGATGATCGGCAGCTTAGGGACGATCTGATGACAATGCTTATTGCTGGCCATGAAACAACTGCCGCTGTTCTTACATGGGCTGTTTTTCTTCTTGCACAAAACCCTTCAAAAATGAAAAAAGCACAAGAAGAGATTGATTTGGTTCTTGGAAAGGGGAGGCCAACTTTTGAATTACTTAAAGGATTGAAGTACGTCAGACTTATTGTTGCTGAGACTCTTCGATTGTTTCCTCAGCCACCATTGTTAATAAGACGAGCCCTCAAACTGGATACATTACCAGGAGGGTACAACGGAGACAAAAATGGATATGCAATTCCTTCAGGGACTGACATCTTCATCTCTGTATACAATCTCCATCGATCTCCATACTTTTGGGATAACCCTGAAGAATTTGAACCAGAGAGATTTGAAGTAAAGAAGGCGAGTGAGGGAATCGAGGGATGGGAAGGTTTCGACCCATCTAGAAGCCCTGGAGCTCTGTACCCGAACGAGATCGTATCAGACTTTTCGTTCTTGCCATTTGGTGGAGGACCTAGAAAATGTGTGGGAGATCAATTTGCTCTAATGGAGTCAACCATAGCACTGGCTATGTTGCTGCAGAAGTTTGATGTGGAACTAAAAGGAAGTCCTGAATCTGTGGAACTGGTCACTGGTGCCACAATTCATACCAAAAGTGGGCTGTGGTGCAAACTGAGAAAAAGATCACAAGTGGATTAA | 1746 | 41.87 | MAMAATSLSNLPSAVFFHGNLHRNEIGFVGMTKQPAKYLKSNLRGSFVRCQSTQVDEPKTKRNLLDNASNLLTNLLSGGNLGSMPTAEGAVSDLFGRPLFFALYDWFLEHGSVYKLAFGPKAFVVVSDPIVARYILRENVFGYDKGVLADILEPIMGKGLIPADLDTWKQRRRVIAPGFHALYLEAMAKVFTDCSERSILKLEKLLGEGELQKDRTIELDMEAEFSSLALDIIGLGVFNFDFGSVTKESPVIKAVYGTLFEAEHRSTFYIPYWKVPLARWIVPRQRKFHSDLKVINDCLDGLIRNARETREEADVEKLQQRDYSNLKDASLLRFLVDMRGADVDDRQLRDDLMTMLIAGHETTAAVLTWAVFLLAQNPSKMKKAQEEIDLVLGKGRPTFELLKGLKYVRLIVAETLRLFPQPPLLIRRALKLDTLPGGYNGDKNGYAIPSGTDIFISVYNLHRSPYFWDNPEEFEPERFEVKKASEGIEGWEGFDPSRSPGALYPNEIVSDFSFLPFGGGPRKCVGDQFALMESTIALAMLLQKFDVELKGSPESVELVTGATIHTKSGLWCKLRKRSQVD | 581 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 5051897 | 5059631 | - | Sed0015103.1 | Sed13g0726 | 734236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed13g0726 | 581 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 517 | 526 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed13g0726 | 581 | Gene3D | Cytochrome P450 | 86 | 581 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0726 | 581 | PRINTS | P450 superfamily signature | 358 | 375 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0726 | 581 | PRINTS | P450 superfamily signature | 410 | 421 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0726 | 581 | PRINTS | P450 superfamily signature | 515 | 524 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0726 | 581 | PRINTS | P450 superfamily signature | 524 | 535 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0726 | 581 | PANTHER | CYTOCHROME P450 FAMILY 4 | 73 | 577 | IPR050196 | GO:0009507(PANTHER) | |
| Sed13g0726 | 581 | Pfam | Cytochrome P450 | 106 | 567 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0726 | 581 | PRINTS | E-class P450 group I signature | 107 | 126 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0726 | 581 | PRINTS | E-class P450 group I signature | 367 | 393 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0726 | 581 | PRINTS | E-class P450 group I signature | 524 | 547 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0726 | 581 | PRINTS | E-class P450 group I signature | 347 | 364 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0726 | 581 | PRINTS | E-class P450 group I signature | 514 | 524 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0726 | 581 | SUPERFAMILY | Cytochrome P450 | 95 | 577 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0726 | 581 | CDD | CYP97 | 101 | 571 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed12g1720 | Sed-Chr12:28384951 | Sed13g0726 | Sed-Chr13:5051897 | 9.00E-41 | dispersed | |
| Sed13g0726 | Sed-Chr13:5051897 | Sed13g1060 | Sed-Chr13:9119606 | 1.80E-122 | dispersed | |
| Sed13g0726 | Sed-Chr13:5051897 | Sed13g1059 | Sed-Chr13:9119606 | 1.20E-121 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed13g0726 | K24543 | - | csv:101210292 | 1054.66 |