Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0729 ATGGTGTTTGGTAGATTTAGGGATGTTGTGTCGTATGTAGCCAGTCGTTGGTCTGGTCGTCAGTCGAATACAGATGCGTTTAAGTCGTCGTCGCCGCCGTTGATCGATTCTTCGGCTCCTCTTGTTGCTGGATTTGATAATCCTGCGATTAAGAACAATTTGAGGCTTTCATCTTCTCTTCAGGATCTCTCTACTTACCGGAGAATTGATCTCGAAGAGGGTAATCACGGCATTGGAAATTCAGGTTCTGATTTTCGACAGCTCCGGCGCGAGAATGGCGGGTCGAGTTACTCGAAGGAGAAGGCATTGCCTGGAGGCTCCTCCTGGTGGATGAACAGGAAGTGGGTGCGGACAATTGTTCTTTTTCTGTGTCTTTTGCTGTTTTGTTTTCTAATTTATACGGTTTCTGTGTATATCTATACGTATTGGTTTCATGGAACTCCAAGATACTATGTGGTGCTTGATTGTGGTAGTACTGGAACTCGAGCTTATGTATATCAAGCGAATGTTAATTATGAGAAAAATGGAGCCCTTCCAATTGCCATTAGGAATACAGGACAGAAGAAGAGACTGAAGTCTCAGAGCGGACGGGCTTATGATCGAAAGGAAACAGAACCCGGGCTTGATAAGTTGGTTCGTAATGTAACTGGTTTGAGGAAAGCTATTAAGCCTCTGATTCAGTGGGCTGAGAAGCAGATTCCTAAGCATGCGCATGAGAGCACTTCGCTTTTCCTTTATGCGACTGCTGGAGTTAGAAAATTACCACCTGCTGATTCAAAATGGCTTCTGGACAATGCTTGGTCTATATTAAAGAGTTCGCGCTTTCGTTGCCAGAGAGAATGGGTTAAAACCATTACAGGTACAGAAGAGGCTTACTACGGCTGGATTGCCCTTAACTATCAAAAAGAATTGTTCGGGGCGACACCAAGGGGACCAACATATGGGGCACTTGACTTGGGGGGCTCTTCTTTGCAAGTAACTTTCGAAAGCAAGGAACAAAATGAGTCTACTTTGAACATTAGAATTGGAAATGTTGATTATCATCTTAATGCCTACTCGCTTACCGGCTATGGTTTAAATGATGCATTTGGGAAGTCTGTTGTTCACCTATTAAGAAGGATTCAAGACCATAAAAAGCTAGACCTGTCTAATGGTAAATTTAAACTTAAGCACCCTTGCCTGCATCCTGGGTACAATGAGCAGTATACCTGTAACCAGTGTGGAAAATTATTGGGCAGAGGAGGTAATTCTGGAATTTCTCTAAGGCTGATTGGTGCTCCGAATTGGGAAGAATGTTCCTTACTTGCTAAGGTTGCAGTAAATTCTTCCGAGTGGTCAAATACGAGCACTGGAATTGATTGTGATGTGCAACCGTGCGCCATAACTAATAACTACCCTCAACCATATGGAAGTTTTTATGCGATTTCTGGTTTCTTTGTGGTATTTCGATATTTCAATCTGAGTTCAGAGTCTACACTTGATGATGTATTAGAAAGGGGCCACAAATTTTGTGAAAAACCTTGGGAAGTTGCAAAGACTAGTGTTGCTCCACAGCCCTTTATTGAGCAATACTGCTTTAGGGCACCATATGTAGTCTCACTCCTTAGAGAGGGGTTGCATATTACTGATAAACAAATTATTATTGGTTCTGGGAGTACAACTTGGACACTTGGGGTTTCACTGTTGGAGGCTGGGAAGGTATTTACAGTTACAACCAAGCTAGGGCTCCATGGTTATGAAATTTTGAAAATGAAGATAGATCCTATAATTCTTATCGTCATTGTGATCACATCGTTGTTTTTCCTGCTTTTCACATTATCGTGTGTAGGCAGTGCAGTGCCGAGATTTTTTAGGAGACCATATCTCCCGATTTTCCGGCATAATACTATCTCCTCCACATCTGTTCTAAACATTCCATCTCCTTTTCGGTTACAGCGGTGGAGTCCAATGAGTTCTGGGGATGGCAGAGTGAAGATGCCACTGAGTCCAACAATTAAAGGTTCTCAACAAAGACCCTTAGGACATGGCTTTAGCAGCAGCAGTGGGATCCAACTTATGGAGTCGTCATCCTTGCACCGGGCAACCAGTAGCGGTGTCTCGCATAGTTATTCTTCAAATAGCCTTGGCCAAATGCAATCTGACAATAGCAGCGTCGGTTCGTTCTGGACCCCGCACCGTAGTCAGATGCACCTTCAAAGTAGACGATCACAATCGAGAGAGGATCTCTCTATGACATTGGCTGAAACACACATGGTGAAGGTTTAG 2265 43.44 MVFGRFRDVVSYVASRWSGRQSNTDAFKSSSPPLIDSSAPLVAGFDNPAIKNNLRLSSSLQDLSTYRRIDLEEGNHGIGNSGSDFRQLRRENGGSSYSKEKALPGGSSWWMNRKWVRTIVLFLCLLLFCFLIYTVSVYIYTYWFHGTPRYYVVLDCGSTGTRAYVYQANVNYEKNGALPIAIRNTGQKKRLKSQSGRAYDRKETEPGLDKLVRNVTGLRKAIKPLIQWAEKQIPKHAHESTSLFLYATAGVRKLPPADSKWLLDNAWSILKSSRFRCQREWVKTITGTEEAYYGWIALNYQKELFGATPRGPTYGALDLGGSSLQVTFESKEQNESTLNIRIGNVDYHLNAYSLTGYGLNDAFGKSVVHLLRRIQDHKKLDLSNGKFKLKHPCLHPGYNEQYTCNQCGKLLGRGGNSGISLRLIGAPNWEECSLLAKVAVNSSEWSNTSTGIDCDVQPCAITNNYPQPYGSFYAISGFFVVFRYFNLSSESTLDDVLERGHKFCEKPWEVAKTSVAPQPFIEQYCFRAPYVVSLLREGLHITDKQIIIGSGSTTWTLGVSLLEAGKVFTVTTKLGLHGYEILKMKIDPIILIVIVITSLFFLLFTLSCVGSAVPRFFRRPYLPIFRHNTISSTSVLNIPSPFRLQRWSPMSSGDGRVKMPLSPTIKGSQQRPLGHGFSSSSGIQLMESSSLHRATSSGVSHSYSSNSLGQMQSDNSSVGSFWTPHRSQMHLQSRRSQSREDLSMTLAETHMVKV 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5085234 5088932 - Sed0021806.2 Sed13g0729 734239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0729 754 Gene3D - 144 287 - -
Sed13g0729 754 Pfam GDA1/CD39 (nucleoside phosphatase) family 149 562 IPR000407 GO:0016787(InterPro)
Sed13g0729 754 MobiDBLite consensus disorder prediction 696 742 - -
Sed13g0729 754 MobiDBLite consensus disorder prediction 696 731 - -
Sed13g0729 754 Gene3D Exopolyphosphatase. Domain 2 288 549 - -
Sed13g0729 754 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 113 567 IPR000407 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1636 Sed-Chr1:11892879 Sed13g0729 Sed-Chr13:5085234 1.20E-75 dispersed
Sed07g0927 Sed-Chr7:6714353 Sed13g0729 Sed-Chr13:5085234 0.00E+00 dispersed
Sed13g0728 Sed-Chr13:5084639 Sed13g0729 Sed-Chr13:5085234 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0729 - - - 0.0