Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed13g0736 | ATGTTTGCTTTCGCCGCTGCCGCCGTCGCCACCACCGCCTTCTTCTTCTTCCTCTTCCTCAAACTCTCCGCCCCCGCTCGGCGGAAGCTCCCCCTTCCGCCGGGCTCGATGGGTTGGCCTTACATGGGTGAAACCCTTCAACTCTACTCTCAAGACCCCAATGTCTTCTTTGCTTCCAAGAAGAAAAGATATGGCCCAATTTTCAAGTCCCACATATTGGGGTATCCTTGTGTGATGCTTTCTAGCCCTGAAGCTGTGAAGTTTGTTTTGGTCACCAAAGCTCATCTCTTTAAGCCTACATTTCCTGCTAGTAAAGAGAGGATGTTGGGTAAAAATGCAATCTTTTTTCATCAAGGTGATTACCATGCCAAATTGAGGCGCCTCGTCCTTCGAAGCTTCATGCCCGAGGCGATTCGAAGCGTCATCCCGAGCATCGAGTCCATTGCGAAGAACAGCGTGCAATCTTGGGATGGCCAATTGATCAACACGTTCCAAGAAATGAAAATGTTTGCATTCGAGGTATCGTTGCTTTCGATATTCGGAAAAGACGAAGCTCTTTACTTCGAAGACCTCAAGCGATGCTACTACATTCTCGAAAAAGGCTACAATTCGATGCCGATAAACCTACCCGGAACACTGTTCCACAAGGCCATGAAAGCTAGGAAGGAACTAGCACATATCTTAAACAACATCCTCACAACCAGGAGGGAAATGAAGCGAGACCACAACGATCTCCTCGGATCTTTCATGGGCGAAAAGGAAGGCCTCACCGACCAACAGATCGCCGATAACGTCATCGGTCTCATCTTCGCCGCTCGCGACACCACAGCGAGTGTCCTAACATGGATCTTGAAGTACCTACGAGAAAACCCAAGTGTTCTTCAAGCTGTCACAGCAGAACAAGAAGCAATAATGAAAGGAAAACAGAGTGGAGATGATAATCTCACCTGGGCTGACACCAAAAACATGCCAATTACTTCAAGGGTGATTCAAGAAACCCTAAGAGTTGCCTCAGTTTTATCATTTACTTTTAGAGAAGCAGTGGAAGATGTTGAATTTGATGGATATTTGATCCCAAAAGGATGGAAAGTTTTGCCCCTATTCAGAAACATTCATCATAGCCCAGAAATCTTCCCTCTGCCTGAAAAGTTTGATCCTTCCAGATTTGAGGTTGCTCAAAAGCCCAATACTTACATGCCATTTGGCAATGGGACCCACTCCTGCCCAGGAAATGAATTAGCCAAATTGGAGATGCTGATTCTAATCCATCATTTAACCACCAAGTACAGATGGAATGTTGTGGGAGCACAAGAAGGAATTCAATATGGTCCATTTGCCCTTCCTGTCAATGGATTGCCCATAAGAATTTTTCTCAAGAAATAA | 1383 | 45.77 | MFAFAAAAVATTAFFFFLFLKLSAPARRKLPLPPGSMGWPYMGETLQLYSQDPNVFFASKKKRYGPIFKSHILGYPCVMLSSPEAVKFVLVTKAHLFKPTFPASKERMLGKNAIFFHQGDYHAKLRRLVLRSFMPEAIRSVIPSIESIAKNSVQSWDGQLINTFQEMKMFAFEVSLLSIFGKDEALYFEDLKRCYYILEKGYNSMPINLPGTLFHKAMKARKELAHILNNILTTRREMKRDHNDLLGSFMGEKEGLTDQQIADNVIGLIFAARDTTASVLTWILKYLRENPSVLQAVTAEQEAIMKGKQSGDDNLTWADTKNMPITSRVIQETLRVASVLSFTFREAVEDVEFDGYLIPKGWKVLPLFRNIHHSPEIFPLPEKFDPSRFEVAQKPNTYMPFGNGTHSCPGNELAKLEMLILIHHLTTKYRWNVVGAQEGIQYGPFALPVNGLPIRIFLKK | 460 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 5209111 | 5212194 | + | Sed0013078.1 | Sed13g0736 | 734246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed13g0736 | 460 | PANTHER | CYTOCHROME P450 26 | 31 | 429 | - | GO:0004497(PANTHER)|GO:0009687(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER) | |
| Sed13g0736 | 460 | SUPERFAMILY | Cytochrome P450 | 27 | 456 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0736 | 460 | FunFam | Abscisic acid 8 | 23 | 458 | - | - | |
| Sed13g0736 | 460 | CDD | CYP90-like | 62 | 457 | - | - | |
| Sed13g0736 | 460 | PRINTS | E-class P450 group I signature | 398 | 408 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0736 | 460 | PRINTS | E-class P450 group I signature | 408 | 431 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0736 | 460 | PRINTS | E-class P450 group I signature | 280 | 306 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0736 | 460 | PRINTS | E-class P450 group I signature | 260 | 277 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0736 | 460 | PRINTS | E-class P450 group I signature | 61 | 80 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0736 | 460 | PRINTS | E-class P450 group I signature | 327 | 345 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0736 | 460 | PRINTS | E-class P450 group I signature | 367 | 391 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0736 | 460 | Pfam | Cytochrome P450 | 33 | 434 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0736 | 460 | PRINTS | P450 superfamily signature | 328 | 339 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0736 | 460 | PRINTS | P450 superfamily signature | 399 | 408 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0736 | 460 | PRINTS | P450 superfamily signature | 271 | 288 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0736 | 460 | PRINTS | P450 superfamily signature | 408 | 419 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0736 | 460 | Gene3D | Cytochrome P450 | 23 | 457 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g0736 | 460 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 401 | 410 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed07g0931 | Sed-Chr7:6788978 | Sed13g0736 | Sed-Chr13:5209111 | 1.10E-228 | dispersed | |
| Sed10g2110 | Sed-Chr10:37578772 | Sed13g0736 | Sed-Chr13:5209111 | 6.50E-78 | dispersed | |
| Sed13g0736 | Sed-Chr13:5209111 | Sed13g1742 | Sed-Chr13:22400999 | 1.30E-155 | dispersed | |
| Sed01g1111 | Sed-Chr1:8323582 | Sed13g0736 | Sed-Chr13:5209111 | 1.80E-160 | transposed | |
| Sed13g0736 | Sed-Chr13:5209111 | Sed07g0930 | Sed-Chr7:6788978 | 4.30E-244 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed13g0736 | K09843 | - | csv:101212508 | 843.188 |