Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g0745 | ATGGGATCCAGTGGGAGTAAATCGTCGAGCAGTTCGCCGCCGTCGGCGGCGGCGGTGGCGGATCTGTCATGTTCTTGGAGAATCCGGAGGGATAGATCCAAAGGGCGGAGAGTTTTTCGGTCTTCTTGCCTTGGTATGGTTTCTGGATCGCACCATATTGACAATGACGATAATGACTGTGAAACTGAGAATAAAAAGAATGCTCATGATTATTCATCTACAAATCAAACTGCTCAAGCATTGGATCAGATGAAAATTGAGGGTTACAAAAGGGTAAAAGCGGATGAATCCGTTGAAGTTCCTTGCATATCGTCGAATGTTGAACTTGATGGATGGGATCAAGAAGGTGTTGCTGTTACTGCCCCCGGAGCTGGAGTTACCTCCGCTCGTGCATCCTCCCTTCAACCATTGAATTCTTCTAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGCAATGTTAGCTTCAGATTGAGTAGAGCAAACAGTTTAGGATCATCTAGATCTTTTCCTGTGTCTTCAACAAATCTCTCAATGTTGAATGATGAAGGCTTGGGTGATCAAGATGAAATGCGGCAAGATAGGGTCGCGTTTCCTGCATCACTAGCTAGTGGAACGCACAGTCAATGTCACGGAGATGGTCCTGATAGTTTTAGGTTAAATACACAACCTTCTGGTCTTTCTAATAACTTACAAGACAATCAGACAGTTTCTTCTACCCATGACATGGCTGCTGATTGTGATAATACAAGAGTAGAACCTGATGGAAACCTTTCCCATCCTTGGACTTTGCTCGAAAATGAAAGTAGTGAGATTAGGCAATCTGACAGACGGACTGGATCTAGGGAACCAGTTGAACGCAATTTTCGTTTCAGTCGGACCCTTAGTGTTGGAAGACTTCGTGATAGAGTTCTACGCAGATCATCATTATCTGATTTTTCATTTTGTCCTCAGCAACAAGAGGGAGAAGATAGAGATGCTAGTCAGAGTGGCAATGATCGACATGTCTGGACTGCTGAGACTAGGGCTTTGTCATCTGCTGATAATGCGATGACCTCTCCAACAACGTCGGGTTATCCAGCTTCTAGTCTATCTAGTTCCTTGTTCAACACCCATGATAATGAAATGGAAACTACCCGACCTAGAGAAACTAGATATCACGATTTTCTGGAAAGCCGATCAAATTTCCTTGAACGGAGAAGAAGAATACGTTCCCAGGTTCGTGCCCTACAACGGTTGGGAAATCGCTTTGAGAACCTATCTGGGCATGAGCGATCGTGTATATTATCCGGTCAACATAGAACCGGTCATTGTACTTGTCGTGTCAATAATCATGGCACAAATGTAAACGATAATACCAGTGCTAGAGCTAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCCTCTCGCCCTGTATCTTCGATTGGCTCTGTGCCTGCACCGAACAATGTTGTAAATTCTTTGCCTGTTAAATTCTATTCCAAGTTGCAAAAGCATCAAAGTGAGGAAGCTGCCCAATGTTATATATGCCTGGTCGAGTACGAGGAAGGAGATAACATGAGAGTCTTGCCTTGCCATCATGAGTTTCATGCAGCGTGTGTCGACAAGTGGTTGAAGGAAATCCACAGGGTATGCCCACTTTGTCGAGGCGATATATGCAGCAGATCTGATACGTTATCAGACAATGTCAAGTGA | 1743 | 43.78 | MGSSGSKSSSSSPPSAAAVADLSCSWRIRRDRSKGRRVFRSSCLGMVSGSHHIDNDDNDCETENKKNAHDYSSTNQTAQALDQMKIEGYKRVKADESVEVPCISSNVELDGWDQEGVAVTAPGAGVTSARASSLQPLNSSSNFLSRFSFIPGNVSFRLSRANSLGSSRSFPVSSTNLSMLNDEGLGDQDEMRQDRVAFPASLASGTHSQCHGDGPDSFRLNTQPSGLSNNLQDNQTVSSTHDMAADCDNTRVEPDGNLSHPWTLLENESSEIRQSDRRTGSREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFSFCPQQQEGEDRDASQSGNDRHVWTAETRALSSADNAMTSPTTSGYPASSLSSSLFNTHDNEMETTRPRETRYHDFLESRSNFLERRRRIRSQVRALQRLGNRFENLSGHERSCILSGQHRTGHCTCRVNNHGTNVNDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPVSSIGSVPAPNNVVNSLPVKFYSKLQKHQSEEAAQCYICLVEYEEGDNMRVLPCHHEFHAACVDKWLKEIHRVCPLCRGDICSRSDTLSDNVK | 580 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5290608 | 5294629 | - | Sed0015190.1 | Sed13g0745 | 734255 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g0745 | 580 | MobiDBLite | consensus disorder prediction | 203 | 285 | - | - | |
Sed13g0745 | 580 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 574 | - | - | |
Sed13g0745 | 580 | MobiDBLite | consensus disorder prediction | 270 | 285 | - | - | |
Sed13g0745 | 580 | MobiDBLite | consensus disorder prediction | 345 | 366 | - | - | |
Sed13g0745 | 580 | Pfam | Ring finger domain | 522 | 565 | IPR001841 | - | |
Sed13g0745 | 580 | MobiDBLite | consensus disorder prediction | 50 | 76 | - | - | |
Sed13g0745 | 580 | MobiDBLite | consensus disorder prediction | 203 | 245 | - | - | |
Sed13g0745 | 580 | SUPERFAMILY | RING/U-box | 501 | 572 | - | - | |
Sed13g0745 | 580 | FunFam | Putative RING zinc finger domain superfamily protein | 491 | 570 | - | - | |
Sed13g0745 | 580 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 486 | 570 | IPR013083 | - | |
Sed13g0745 | 580 | SMART | ring_2 | 523 | 564 | IPR001841 | - | |
Sed13g0745 | 580 | MobiDBLite | consensus disorder prediction | 52 | 68 | - | - | |
Sed13g0745 | 580 | ProSiteProfiles | Zinc finger RING-type profile. | 523 | 565 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0935 | Sed-Chr7:6820745 | Sed13g0745 | Sed-Chr13:5290608 | 3.00E-253 | dispersed | |
Sed08g0619 | Sed-Chr8:4289099 | Sed13g0745 | Sed-Chr13:5290608 | 5.00E-39 | dispersed | |
Sed11g2217 | Sed-Chr11:35743773 | Sed13g0745 | Sed-Chr13:5290608 | 3.50E-07 | dispersed | |
Sed12g1879 | Sed-Chr12:29989930 | Sed13g0745 | Sed-Chr13:5290608 | 3.90E-09 | dispersed | |
Sed12g1880 | Sed-Chr12:29989930 | Sed13g0745 | Sed-Chr13:5290608 | 3.90E-09 | dispersed | |
Sed12g2326 | Sed-Chr12:33290498 | Sed13g0745 | Sed-Chr13:5290608 | 1.50E-35 | dispersed | |
Sed13g0745 | Sed-Chr13:5290608 | Sed14g1642 | Sed-Chr14:24590175 | 7.10E-10 | dispersed | |
Sed13g0745 | Sed-Chr13:5290608 | Sed07g0934 | Sed-Chr7:6820745 | 2.10E-267 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g0745 | - | - | - | 0.0 |