Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0745 ATGGGATCCAGTGGGAGTAAATCGTCGAGCAGTTCGCCGCCGTCGGCGGCGGCGGTGGCGGATCTGTCATGTTCTTGGAGAATCCGGAGGGATAGATCCAAAGGGCGGAGAGTTTTTCGGTCTTCTTGCCTTGGTATGGTTTCTGGATCGCACCATATTGACAATGACGATAATGACTGTGAAACTGAGAATAAAAAGAATGCTCATGATTATTCATCTACAAATCAAACTGCTCAAGCATTGGATCAGATGAAAATTGAGGGTTACAAAAGGGTAAAAGCGGATGAATCCGTTGAAGTTCCTTGCATATCGTCGAATGTTGAACTTGATGGATGGGATCAAGAAGGTGTTGCTGTTACTGCCCCCGGAGCTGGAGTTACCTCCGCTCGTGCATCCTCCCTTCAACCATTGAATTCTTCTAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGCAATGTTAGCTTCAGATTGAGTAGAGCAAACAGTTTAGGATCATCTAGATCTTTTCCTGTGTCTTCAACAAATCTCTCAATGTTGAATGATGAAGGCTTGGGTGATCAAGATGAAATGCGGCAAGATAGGGTCGCGTTTCCTGCATCACTAGCTAGTGGAACGCACAGTCAATGTCACGGAGATGGTCCTGATAGTTTTAGGTTAAATACACAACCTTCTGGTCTTTCTAATAACTTACAAGACAATCAGACAGTTTCTTCTACCCATGACATGGCTGCTGATTGTGATAATACAAGAGTAGAACCTGATGGAAACCTTTCCCATCCTTGGACTTTGCTCGAAAATGAAAGTAGTGAGATTAGGCAATCTGACAGACGGACTGGATCTAGGGAACCAGTTGAACGCAATTTTCGTTTCAGTCGGACCCTTAGTGTTGGAAGACTTCGTGATAGAGTTCTACGCAGATCATCATTATCTGATTTTTCATTTTGTCCTCAGCAACAAGAGGGAGAAGATAGAGATGCTAGTCAGAGTGGCAATGATCGACATGTCTGGACTGCTGAGACTAGGGCTTTGTCATCTGCTGATAATGCGATGACCTCTCCAACAACGTCGGGTTATCCAGCTTCTAGTCTATCTAGTTCCTTGTTCAACACCCATGATAATGAAATGGAAACTACCCGACCTAGAGAAACTAGATATCACGATTTTCTGGAAAGCCGATCAAATTTCCTTGAACGGAGAAGAAGAATACGTTCCCAGGTTCGTGCCCTACAACGGTTGGGAAATCGCTTTGAGAACCTATCTGGGCATGAGCGATCGTGTATATTATCCGGTCAACATAGAACCGGTCATTGTACTTGTCGTGTCAATAATCATGGCACAAATGTAAACGATAATACCAGTGCTAGAGCTAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCCTCTCGCCCTGTATCTTCGATTGGCTCTGTGCCTGCACCGAACAATGTTGTAAATTCTTTGCCTGTTAAATTCTATTCCAAGTTGCAAAAGCATCAAAGTGAGGAAGCTGCCCAATGTTATATATGCCTGGTCGAGTACGAGGAAGGAGATAACATGAGAGTCTTGCCTTGCCATCATGAGTTTCATGCAGCGTGTGTCGACAAGTGGTTGAAGGAAATCCACAGGGTATGCCCACTTTGTCGAGGCGATATATGCAGCAGATCTGATACGTTATCAGACAATGTCAAGTGA 1743 43.78 MGSSGSKSSSSSPPSAAAVADLSCSWRIRRDRSKGRRVFRSSCLGMVSGSHHIDNDDNDCETENKKNAHDYSSTNQTAQALDQMKIEGYKRVKADESVEVPCISSNVELDGWDQEGVAVTAPGAGVTSARASSLQPLNSSSNFLSRFSFIPGNVSFRLSRANSLGSSRSFPVSSTNLSMLNDEGLGDQDEMRQDRVAFPASLASGTHSQCHGDGPDSFRLNTQPSGLSNNLQDNQTVSSTHDMAADCDNTRVEPDGNLSHPWTLLENESSEIRQSDRRTGSREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFSFCPQQQEGEDRDASQSGNDRHVWTAETRALSSADNAMTSPTTSGYPASSLSSSLFNTHDNEMETTRPRETRYHDFLESRSNFLERRRRIRSQVRALQRLGNRFENLSGHERSCILSGQHRTGHCTCRVNNHGTNVNDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPVSSIGSVPAPNNVVNSLPVKFYSKLQKHQSEEAAQCYICLVEYEEGDNMRVLPCHHEFHAACVDKWLKEIHRVCPLCRGDICSRSDTLSDNVK 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5290608 5294629 - Sed0015190.1 Sed13g0745 734255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0745 580 MobiDBLite consensus disorder prediction 203 285 - -
Sed13g0745 580 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 574 - -
Sed13g0745 580 MobiDBLite consensus disorder prediction 270 285 - -
Sed13g0745 580 MobiDBLite consensus disorder prediction 345 366 - -
Sed13g0745 580 Pfam Ring finger domain 522 565 IPR001841 -
Sed13g0745 580 MobiDBLite consensus disorder prediction 50 76 - -
Sed13g0745 580 MobiDBLite consensus disorder prediction 203 245 - -
Sed13g0745 580 SUPERFAMILY RING/U-box 501 572 - -
Sed13g0745 580 FunFam Putative RING zinc finger domain superfamily protein 491 570 - -
Sed13g0745 580 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 486 570 IPR013083 -
Sed13g0745 580 SMART ring_2 523 564 IPR001841 -
Sed13g0745 580 MobiDBLite consensus disorder prediction 52 68 - -
Sed13g0745 580 ProSiteProfiles Zinc finger RING-type profile. 523 565 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0935 Sed-Chr7:6820745 Sed13g0745 Sed-Chr13:5290608 3.00E-253 dispersed
Sed08g0619 Sed-Chr8:4289099 Sed13g0745 Sed-Chr13:5290608 5.00E-39 dispersed
Sed11g2217 Sed-Chr11:35743773 Sed13g0745 Sed-Chr13:5290608 3.50E-07 dispersed
Sed12g1879 Sed-Chr12:29989930 Sed13g0745 Sed-Chr13:5290608 3.90E-09 dispersed
Sed12g1880 Sed-Chr12:29989930 Sed13g0745 Sed-Chr13:5290608 3.90E-09 dispersed
Sed12g2326 Sed-Chr12:33290498 Sed13g0745 Sed-Chr13:5290608 1.50E-35 dispersed
Sed13g0745 Sed-Chr13:5290608 Sed14g1642 Sed-Chr14:24590175 7.10E-10 dispersed
Sed13g0745 Sed-Chr13:5290608 Sed07g0934 Sed-Chr7:6820745 2.10E-267 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0745 - - - 0.0