Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0746 ATGGGAAGTCAAAACTTTGGTTTATGGCTATTTATGATTGCATATCTGCAGTTTTTGATTAAAATGGAGTGTATTAATGTGAGGATTACTTATGTTCAAGAAGCTGTTGCCAAGGGAGCTGTTTGTTTGGATGGAAGTCCTCCAGCTTATCACTTCAGCAAAGGTGCCGGCGCTGGGGTCGACAATTGGCTCATTCTACTCGAGGGGGGAGGATGGTGCAACGATGTCACAACTTGTCTCCAACGCAAGGACACCAAATTAGGTTCGTCGAAGAAAATGGAAACCGAGCTTGCGTTCTTCGGAATTTTGTCGAATCGACCAAAATTCAATCCAGATTTTTTTAACTGGAATAGGATCATGGTTAGGTACTGTGATGGATCTTCTTACACTGGAGACGTTGAAGCCGTTGATCCCGCCACCAATCTGCATTTCAGAGGAGCAAGAGTTTTTCGTGCTGTCATCGATAACCTACTCGCCAAGGGAATGAAAAATGCGAAATATGCTATTCTCTCGGGATGTTCGGCGGGTGGATTAGGCGTCATTATGAATTGTGATCGCTTTAAATCTCTACTACCTCCTACTACTAAAATAAAGTGCCTCTCAGATGCAGGATTCTTTATCAACGTGAAAGACATCTCTGGAGCACGACATATCGAAGAGTTCTTTAGCGACGTAGTTGCCACTCATGGTTCTGCTAAGAATTTGCCTGCATTGTGCACTTCGAAAATGAAACCGGGGTTGTGTTTCTTTCCCCCAAATGTTGTTCAGCTCATTCAGACTCCAATCTTCCTTGTAAATCCAGCTTATGATTCCTGGCAGGTAAGGAATATTCTGGTTCCCGGTGTCGCCGATCCACGCGGTACTTGGCGCAACTGCAAGCTCGATATCAGTAACTGCTCGCCTACTCAGCTTCAAATCGTGCAAGATTACAGGGATCAGTTTTTGAGTGCATTGAATGGCCTTGGAAATTCTTCATCAAGAGGATTCTTCATAGTTTCTTGCTATGTTCATTGCCAAATCTCAAAGCAGGAGAAATGGTTACTAGCAGGCTCTCCCATGCTTAGTAATACGACCATTGCAAAGGCATTTGGAGACTGGTATTTTGACAGGAGGTTCTTGCAAATGGATTGGGCAATGGTCCAAAAAGCTTGGGACAAATGGGCTTCGGCCACCATTGGCACCTTCGGTCAGCCATTGAAAGCCGCTCTGTTGATTAATTATGATCCAACCGGACCTTCCCGCTTGCTTTCCACCATTGCAGAACAAGAAGGAATATTACTTAATCCCATAGAACTGAATCAATTCGTCGATTTTATCAAACGCGATAAACCCCAGACGGAGAGTTTCAGCATTGGTTCAAATCAATACATAATGACATCAGTTCATGAAAATTGGTTTAGTGCAAGGTGCATGAACACTATAAAGCATGCTGGTGAAGGTGTTGTTATTGTGCAAACAACAGCATTTATTTTGGTTGCTATGTATGATGGTTCCATTGCTGCAGCATCTCGCGCTATGGCTGCGGCCGATCAGTTATCCTGGCAATTAGGGAGGAAATATTTTTAG 1566 43.68 MGSQNFGLWLFMIAYLQFLIKMECINVRITYVQEAVAKGAVCLDGSPPAYHFSKGAGAGVDNWLILLEGGGWCNDVTTCLQRKDTKLGSSKKMETELAFFGILSNRPKFNPDFFNWNRIMVRYCDGSSYTGDVEAVDPATNLHFRGARVFRAVIDNLLAKGMKNAKYAILSGCSAGGLGVIMNCDRFKSLLPPTTKIKCLSDAGFFINVKDISGARHIEEFFSDVVATHGSAKNLPALCTSKMKPGLCFFPPNVVQLIQTPIFLVNPAYDSWQVRNILVPGVADPRGTWRNCKLDISNCSPTQLQIVQDYRDQFLSALNGLGNSSSRGFFIVSCYVHCQISKQEKWLLAGSPMLSNTTIAKAFGDWYFDRRFLQMDWAMVQKAWDKWASATIGTFGQPLKAALLINYDPTGPSRLLSTIAEQEGILLNPIELNQFVDFIKRDKPQTESFSIGSNQYIMTSVHENWFSARCMNTIKHAGEGVVIVQTTAFILVAMYDGSIAAASRAMAAADQLSWQLGRKYF 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5298662 5309330 - Sed0011898.1 Sed13g0746 734256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0746 521 Gene3D Dynein light chain 2a, cytoplasmic 383 519 - -
Sed13g0746 521 PANTHER NOTUM-RELATED 24 371 IPR004963 GO:0009505(PANTHER)|GO:0016787(InterPro)|GO:0052793(PANTHER)|GO:0071555(PANTHER)
Sed13g0746 521 Pfam Profilin 417 513 IPR048278 GO:0003779(InterPro)
Sed13g0746 521 Pfam Pectinacetylesterase 25 371 IPR004963 GO:0016787(InterPro)
Sed13g0746 521 SUPERFAMILY Profilin (actin-binding protein) 384 510 IPR036140 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0746 Sed-Chr13:5298662 Sed13g0748 Sed-Chr13:5311932 3.90E-185 dispersed
Sed13g0746 Sed-Chr13:5298662 Sed13g0747 Sed-Chr13:5311932 3.90E-185 tandem
Sed13g0746 Sed-Chr13:5298662 Sed07g0936 Sed-Chr7:6837442 5.80E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0746 K19882 - vvi:100245856 743.806