Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0747 ATGGGAAGTCAAAACTTTGGTTTATGGCTATTTGTGATTGCATCTCTGCAGTTTTTCATTGAAATACAATGTATTAATGTGGGGATTACTTATGTTCAAGAAGCTGGTGCCAAGGGAGCTGTTTGTTTGGATGGAAGTCCTCCAGCTTATCACTTCAGCGAAGGATTCGGCGCCGGGATCGACAATTGGTTCATTCTACTCGAGGGAGGAGGATGGTGCAACAATGCCACAACTTGTCTCCAGCGCAGGGACACTCGCTTAGGTTCGTCTCGGAAAATGGTCACAGAGCTCGCATTCTCGGGGATTTTGACCAATAAACAAAAATTCAATCCGGATTTTTATAACTGGAACAGAATCAAGGTTAGGTACTGTGATGGATCTTCGTTCACGGGAGACGTTGAAGCCGTTAATCCGGCCACCAACCTGCATTTCAGAGGAGCAAGAGTTTTTCGTGCTGTCGTTGATGACCTTCTCTCCAAGGGAATGAAAAATGCGAAAAACGCTATTCTCTCGGGATGTTCGGCGGGTGGATTAGGCGCCATTTTGAATTGTGATCGCTTCAAATCTCTACTACCTTCTACTACTAAAGTAAAGTGCCTCTCAGATGCAGGATACTTTATCAATGCGAAAACCATCTCTGGAACACAGCATATCGAGAACTTTTATAGCGACGTAGTTGCCACTCATGCTTCAGCTAAGAATTTACCTGCATCATGCACTTCAAAAATGAAACCCGAGTTGTGTTTCTTTCCCCAAAATGTTGTTAAGCTCATTCAGACTCCAATCTTCCTTGTAAATGCAGCTTATGATTCATGGCAGATAAAGAATATTCTGGCTCCCGGTGTCGCCGATCCACACGGTACCTGGCGCAACTGCAAGCTCGATATCAAGAACTGTTTGCCTAGTCAGCTTCAAGTCATGCAAGATTTCAGGGATCAGTTTTTGACTGCATTGAATGGCGTTGGAGACTCTTTATCAAGAGGAATGTTCATAGTTTCTTGCTATGCTCATTGCCAAATCTCAACGCAGGAGACTTGGTTACGAGCGGACTCTCCCGTGCTTAGTAAGACGACCATTGCAAAGGCGGTTGGAGACTGGTATTTTGACAGGAGTCCATTTCAAAAGATCGACTGTCCTTACCCGTGCAACCCAACGTGCCACAACCGCAATTTCGAAGCAAATAACAACCTCGATTGA 1197 44.78 MGSQNFGLWLFVIASLQFFIEIQCINVGITYVQEAGAKGAVCLDGSPPAYHFSEGFGAGIDNWFILLEGGGWCNNATTCLQRRDTRLGSSRKMVTELAFSGILTNKQKFNPDFYNWNRIKVRYCDGSSFTGDVEAVNPATNLHFRGARVFRAVVDDLLSKGMKNAKNAILSGCSAGGLGAILNCDRFKSLLPSTTKVKCLSDAGYFINAKTISGTQHIENFYSDVVATHASAKNLPASCTSKMKPELCFFPQNVVKLIQTPIFLVNAAYDSWQIKNILAPGVADPHGTWRNCKLDIKNCLPSQLQVMQDFRDQFLTALNGVGDSLSRGMFIVSCYAHCQISTQETWLRADSPVLSKTTIAKAVGDWYFDRSPFQKIDCPYPCNPTCHNRNFEANNNLD 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5311932 5318097 - Sed0002546.1 Sed13g0747 734257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0747 398 Pfam Pectinacetylesterase 25 372 IPR004963 GO:0016787(InterPro)
Sed13g0747 398 PANTHER NOTUM-RELATED 25 388 IPR004963 GO:0009505(PANTHER)|GO:0016787(InterPro)|GO:0052793(PANTHER)|GO:0071555(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1033 Sed-Chr7:7454697 Sed13g0747 Sed-Chr13:5311932 2.40E-78 dispersed
Sed07g1034 Sed-Chr7:7454697 Sed13g0747 Sed-Chr13:5311932 2.60E-77 dispersed
Sed13g0746 Sed-Chr13:5298662 Sed13g0747 Sed-Chr13:5311932 3.90E-185 tandem
Sed13g0747 Sed-Chr13:5311932 Sed13g0748 Sed-Chr13:5311932 1.30E-241 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0747 K19882 - csv:101214431 719.153