Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0748 ATGCCTTTTGGTTATCTGTGTAGGAACAAGATGGGAAGTCAAAACTTTGGTTTATGGCTATTTGTGATTGCATCTCTGCAGTTTTTCATTGAAATACAATGTATTAATGTGGGGATTACTTATGTTCAAGAAGCTGGTGCCAAGGGAGCTGTTTGTTTGGATGGAAGTCCTCCAGCTTATCACTTCAGCGAAGGATTCGGCGCCGGGATCGACAATTGGTTCATTCTACTCGAGGGAGGAGGATGGTGCAACAATGCCACAACTTGTCTCCAGCGCAGGGACACTCGCTTAGGTTCGTCTCGGAAAATGGTCACAGAGCTCGCATTCTCGGGGATTTTGACCAATAAACAAAAATTCAATCCGGATTTTTATAACTGGAACAGAATCAAGGTTAGGTACTGTGATGGATCTTCGTTCACGGGAGACGTTGAAGCCGTTAATCCGGCCACCAACCTGCATTTCAGAGGAGCAAGAGTTTTTCGTGCTGTCGTTGATGACCTTCTCTCCAAGGGAATGAAAAATGCGAAAAACGCTATTCTCTCGGGATGTTCGGCGGGTGGATTAGGCGCCATTTTGAATTGTGATCGCTTCAAATCTCTACTACCTTCTACTACTAAAGTAAAGTGCCTCTCAGATGCAGGATACTTTATCAATGCGAAAACCATCTCTGGAACACAGCATATCGAGAACTTTTATAGCGACGTAGTTGCCACTCATGCTTCAGCTAAGAATTTACCTGCATCATGCACTTCAAAAATGAAACCCGAGTTGTGTTTCTTTCCCCAAAATGTTGTTAAGCTCATTCAGACTCCAATCTTCCTTGTAAATGCAGCTTATGATTCATGGCAGATAAAGAATATTCTGGCTCCCGGTGTCGCCGATCCACACGGTACCTGGCGCAACTGCAAGCTCGATATCAAGAACTGTTTGCCTAGTCAGCTTCAAGTCATGCAAGATTTCAGGGATCAGTTTTTGACTGCATTGAATGGCGTTGGAGACTCTTTATCAAGAGGAATGTTCATAGTTTCTTGCTATGCTCATTGCCAAATCTCAACGCAGGAGACTTGGTTACGAGCGGACTCTCCCGTGCTTAGTAAGACGACCATTGCAAAGGCGGTTGGAGACTGGTATTTTGACAGGAGTCCATTTCAAAAGATCGACTGTCCTTACCCGTGCAACCCAACGTGCCACAACCGCAATTTCGAAGCAAATAACAACCTCGATTGA 1227 44.66 MPFGYLCRNKMGSQNFGLWLFVIASLQFFIEIQCINVGITYVQEAGAKGAVCLDGSPPAYHFSEGFGAGIDNWFILLEGGGWCNNATTCLQRRDTRLGSSRKMVTELAFSGILTNKQKFNPDFYNWNRIKVRYCDGSSFTGDVEAVNPATNLHFRGARVFRAVVDDLLSKGMKNAKNAILSGCSAGGLGAILNCDRFKSLLPSTTKVKCLSDAGYFINAKTISGTQHIENFYSDVVATHASAKNLPASCTSKMKPELCFFPQNVVKLIQTPIFLVNAAYDSWQIKNILAPGVADPHGTWRNCKLDIKNCLPSQLQVMQDFRDQFLTALNGVGDSLSRGMFIVSCYAHCQISTQETWLRADSPVLSKTTIAKAVGDWYFDRSPFQKIDCPYPCNPTCHNRNFEANNNLD 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5311932 5317909 - Sed0002546.2 Sed13g0748 734258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0748 408 PANTHER NOTUM-RELATED 35 398 IPR004963 GO:0009505(PANTHER)|GO:0016787(InterPro)|GO:0052793(PANTHER)|GO:0071555(PANTHER)
Sed13g0748 408 Pfam Pectinacetylesterase 35 382 IPR004963 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0938 Sed-Chr7:6851108 Sed13g0748 Sed-Chr13:5311932 1.60E-190 dispersed
Sed07g0939 Sed-Chr7:6851108 Sed13g0748 Sed-Chr13:5311932 2.20E-199 dispersed
Sed07g0940 Sed-Chr7:6851108 Sed13g0748 Sed-Chr13:5311932 2.30E-132 dispersed
Sed13g0746 Sed-Chr13:5298662 Sed13g0748 Sed-Chr13:5311932 3.90E-185 dispersed
Sed13g0747 Sed-Chr13:5311932 Sed13g0748 Sed-Chr13:5311932 1.30E-241 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0748 K19882 - csv:101214431 721.079