Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0765 ATGGATTTCGATCTGGACTTGGACATTTCTTGGCCTTTGGATCAAATCCCTTCATTTGCTTCTTCCAATCCCATGTCCCCTTTTCTTGGTTCCCCTCTTTGGGGCTTCTCTGAGGCTGATGATCACGGCTCTGTTCTTGGTACTTCCGATTCGAATTCTATACCGCAAAACCCGACTGAGAACCACAAGTTTAAGATTCTTCCAGTTCCATCTTCATCATGGGGACTAATGCCGTTGGATAATCCAGATGGGTATTGCTTAATCAAAGAAAAAATGGCGCAAGCTCTTCGGTACATTAAAGAATCGTCCGACCAGCATGTTCTAGCTCAGGTTTGGGCGCCTGTAAAATGGGGTGGCAAGCTTGTACTTTCAACTTCCGGTCAACCGTTTGTCCTTGATACACAGAGCAATGGACTTCATCAGTATAGGATGATCTCTTTGACATATATGTTCGCTTTCGACACCGACTCAGATGGATATCTCGGGCTCCCAGGGCGTGTTTTCCAACAAAAGTTGCCTGAATGGACTCCAAATGTGCAGTATTACTCAAGCAAGGAGTTTCCACGACTTAGTTACGCTCTACACTACAATGTTCAGGGAACTCTGGCTTTGCCTGTTTTCGAACCCTCGGGGAATTCTTGTCTTGGTGTTCTCGAGCTAATCATGACCTCACCGAAGATCAATTATGCACATGAGGTGGACAAAGTCTGCAAAGCTCTTCAGGCTGTCAATCTAAGAAGTTCAGAGATTATAGATCACCCAAAGATCCAGATTTGCAATGAAGGTCGACAAAATGCGCTGGCCGAAATTTTGGAGGTACTCACAGTTGTATGTGAAACTCATAAATTACCATTAGCTCAAACATGGGTTCCGTGCAGGCATCGAAACGTGCTCGCCAACGGTGGAGGTTTCAAGAAAAGTTGTACTAGCTTTGATGGTAGTTGCATGGGACGGATTTGTATGTCTGTAACTGAAGTAGCATCCTATGTTGTTGATGCTCACATGTGGGGTTTTCGCGAGGCATGTTTAGAACACCATTTACAAAAGGGGCAAGGGGTTTCTGGGAGAGCGTTTTCGTCCCACAGTTCGTGTTTTTGTGGAGACATCACCCAATTCTGCAAGACCGAATACCCTTTGGTTCACTATGCACTCATGTTTGGATTAAAAAGCTGTTTTTCGATCTGTTTACGGAGCACGTTTACTGGAGATGATGAGTACATTCTAGAATTTTTTCTGCCACCCAGCATTGTTGATGATCAGGAACAAAAGATTCTGTTGGGTGCATTAATGGCAACAATGAAGCAGCATTTCTACTCTCTCAAAGTTGCTTCTGGAATCAAACTTGAGGAGGAAGGACTAGTCGAGATCGTTCAAGCATCGAGGAATGTAGGGTTCGAGTCTAGACTTGAGTACATTCAAATTCCCAAACCACCACCTGAGTCTGATGCCATGGTGAATGTAGGAGAGGTAGTTGCATTAGAAACCTTGCAACAACAATGTTTAATGGTTCATGATGCCCTGAAGTATGAAAAGAATACCGCTCGGTATGGGGAAAGCCACAACCCTGCTCCTCTCCCCCAGAATACGACATCGAAAAGGAAGCGAGGAAAAGCCGAGAAATCAATTAGTCTGGAGGTTCTTCAACAGTATTTTTCTGGCAGTCTAAAGGATGCTGCTAAAAGCCTTGGCGTTTGTCCCACAACAATGAAGCGTATCTGTAGGCAACATGGGATCTCACGGTGGCCATCTCGGAAGATCAACAAGGTGAATCGGTCTCTTTCAAAGCTAAAACGCGTGATTGAATCTGTTCAAGGGGCCGAAGGAGCATTCAGAATGTCTCCTTTGGCTACAAGTCCAGTTCATGTTGCTGTTAGTTCGGATTCTCATCCTTTAACGCCAGACGAGTTTAATCAGCAAAACTTTGTTGCTTCTCAATCCTCTGATCCTCAACATAAAGAAACAAACATCTCAGAAGCTAGACTGGAAGATCAATTAAAGAGGGGAGTGTTGAGTCCGGAAGAACCAATCTACGTGACGAATGGATTTCTACCGAAGCTTAGAAATGTCTTGAACAATTCGAAAACGGGAAGTGGATCACGGGAAGAGAGTGCTGGAACACCTACTTCTCATGGTTCATGCCAAGGTAGTCCCGCAAACGAAAGTCCACTTAGGAATAATCCCATTTCTATTCCACACCAAGAACATTGTGTAAGAAGAGAATCTCCTGAAGCAGCATTTCATCAGATAGATAACCTAAATGTATTGGTGCCTATTCGGGATACGCTCGTGATGGTTGAGCCCGAGGAACCATTTGTAGGAATGCTGATTAAAGATGCAGGAAGTTCTAAGGAGTTAAAAAATCTTTGTTCTTTTGTCGCTGATGCTGTTCTCTACGAGCAAGTACCCGAATTTCGCTGGCTCAACCCTCCTGATATAGCTCTGAGACAACCGCTGGACTCTATTTGTCACACAGTCCCTCATATATCAGCAATGAAAGAACCAAGGCGAATGACTATCAAGGCTACTTATAAGGAAGATATCATTCGATTTCGAATGTCCATGAGTTCTGGTATTGTGGAGTTAAGAGAAGAAGTGGCTAAGCGATTGAAATTGGAGGTTGGTACGTTCGATATCAAATACATAGATGATGATCGTGAATGGGTTCTTATTGCCTGTGATGCAGACCTACAAGAGTGTGTAGATATCTCAAAATCATCAGGTAGCAACATAATAAGATTGTTGGTTCATGATTTATCTGTTAATCTTGGGTGTTCTTGTGAGAGTACTCGGGAGTGA 2796 43.74 MDFDLDLDISWPLDQIPSFASSNPMSPFLGSPLWGFSEADDHGSVLGTSDSNSIPQNPTENHKFKILPVPSSSWGLMPLDNPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKWGGKLVLSTSGQPFVLDTQSNGLHQYRMISLTYMFAFDTDSDGYLGLPGRVFQQKLPEWTPNVQYYSSKEFPRLSYALHYNVQGTLALPVFEPSGNSCLGVLELIMTSPKINYAHEVDKVCKALQAVNLRSSEIIDHPKIQICNEGRQNALAEILEVLTVVCETHKLPLAQTWVPCRHRNVLANGGGFKKSCTSFDGSCMGRICMSVTEVASYVVDAHMWGFREACLEHHLQKGQGVSGRAFSSHSSCFCGDITQFCKTEYPLVHYALMFGLKSCFSICLRSTFTGDDEYILEFFLPPSIVDDQEQKILLGALMATMKQHFYSLKVASGIKLEEEGLVEIVQASRNVGFESRLEYIQIPKPPPESDAMVNVGEVVALETLQQQCLMVHDALKYEKNTARYGESHNPAPLPQNTTSKRKRGKAEKSISLEVLQQYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFRMSPLATSPVHVAVSSDSHPLTPDEFNQQNFVASQSSDPQHKETNISEARLEDQLKRGVLSPEEPIYVTNGFLPKLRNVLNNSKTGSGSREESAGTPTSHGSCQGSPANESPLRNNPISIPHQEHCVRRESPEAAFHQIDNLNVLVPIRDTLVMVEPEEPFVGMLIKDAGSSKELKNLCSFVADAVLYEQVPEFRWLNPPDIALRQPLDSICHTVPHISAMKEPRRMTIKATYKEDIIRFRMSMSSGIVELREEVAKRLKLEVGTFDIKYIDDDREWVLIACDADLQECVDISKSSGSNIIRLLVHDLSVNLGCSCESTRE 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5495140 5500231 - Sed0008415.1 Sed13g0765 734275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0765 931 Pfam NLP protein GAF domain 257 440 IPR055081 -
Sed13g0765 931 ProSiteProfiles RWP-RK domain profile. 526 609 IPR003035 -
Sed13g0765 931 Gene3D - 834 917 - -
Sed13g0765 931 MobiDBLite consensus disorder prediction 689 729 - -
Sed13g0765 931 FunFam RWP-RK domain-containing protein 833 917 - -
Sed13g0765 931 SUPERFAMILY CAD & PB1 domains 829 918 - -
Sed13g0765 931 PANTHER PROTEIN NLP8 31 929 IPR045012 GO:0003700(InterPro)
Sed13g0765 931 SMART PB1_new 836 918 IPR000270 GO:0005515(InterPro)
Sed13g0765 931 CDD PB1_NLP 837 917 IPR034891 -
Sed13g0765 931 Pfam RWP-RK domain 541 588 IPR003035 -
Sed13g0765 931 ProSiteProfiles PB1 domain profile. 836 918 IPR053793 -
Sed13g0765 931 MobiDBLite consensus disorder prediction 689 728 - -
Sed13g0765 931 Pfam PB1 domain 837 917 IPR000270 GO:0005515(InterPro)
Sed13g0765 931 MobiDBLite consensus disorder prediction 514 538 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0765 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0965 Sed-Chr2:47190067 Sed13g0765 Sed-Chr13:5495140 2.50E-119 dispersed
Sed07g0954 Sed-Chr7:6956869 Sed13g0765 Sed-Chr13:5495140 0.00E+00 dispersed
Sed07g0955 Sed-Chr7:6956869 Sed13g0765 Sed-Chr13:5495140 0.00E+00 dispersed
Sed12g0539 Sed-Chr12:3305437 Sed13g0765 Sed-Chr13:5495140 4.80E-120 dispersed
Sed13g0765 Sed-Chr13:5495140 Sed13g0768 Sed-Chr13:5495140 0.00E+00 dispersed
Sed13g0765 Sed-Chr13:5495140 Sed13g0766 Sed-Chr13:5495140 0.00E+00 tandem
Sed13g0765 Sed-Chr13:5495140 Sed07g0953 Sed-Chr7:6956869 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g0953 . 180 981 NLP Transcription Factor Family AT1G64530 51.7 3.1e-214 742.7
Sed07g0954 . 106 907 NLP Transcription Factor Family AT1G64530 51.7 3.1e-214 742.7
Sed07g0955 . 67 868 NLP Transcription Factor Family AT1G64530 51.7 3.1e-214 742.7
Sed13g0765 . 143 931 NLP Transcription Factor Family AT1G64530 50.8 3.4e-213 739.2
Sed13g0768 . 67 855 NLP Transcription Factor Family AT1G64530 50.8 3.4e-213 739.2
Sed13g0766 . 143 903 NLP Transcription Factor Family AT1G64530 50.9 3.1e-206 716.1
Sed13g0767 . 67 827 NLP Transcription Factor Family AT1G64530 50.9 3.1e-206 716.1
Sed07g0953 . 259 981 NLP Transcription Factor Family AT4G24020 54.5 2.8e-199 693.0
Sed07g0954 . 185 907 NLP Transcription Factor Family AT4G24020 54.5 2.8e-199 693.0
Sed07g0955 . 146 868 NLP Transcription Factor Family AT4G24020 54.5 2.8e-199 693.0
Sed13g0765 . 222 931 NLP Transcription Factor Family AT4G24020 52.5 2.3e-193 673.3
Sed13g0768 . 146 855 NLP Transcription Factor Family AT4G24020 52.5 2.3e-193 673.3
Sed13g0766 . 222 912 NLP Transcription Factor Family AT4G24020 51.8 2.6e-184 643.3
Sed13g0767 . 146 836 NLP Transcription Factor Family AT4G24020 51.8 2.6e-184 643.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40381 PF00564 PB1 3.30E-20 CL0072 Sed TF