Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0767 ATGCCGTTGGATAATCCAGATGGGTATTGCTTAATCAAAGAAAAAATGGCGCAAGCTCTTCGGTACATTAAAGAATCGTCCGACCAGCATGTTCTAGCTCAGGTTTGGGCGCCTGTAAAATGGGGTGGCAAGCTTGTACTTTCAACTTCCGGTCAACCGTTTGTCCTTGATACACAGAGCAATGGACTTCATCAGTATAGGATGATCTCTTTGACATATATGTTCGCTTTCGACACCGACTCAGATGGATATCTCGGGCTCCCAGGGCGTGTTTTCCAACAAAAGTTGCCTGAATGGACTCCAAATGTGCAGTATTACTCAAGCAAGGAGTTTCCACGACTTAGTTACGCTCTACACTACAATGTTCAGGGAACTCTGGCTTTGCCTGTTTTCGAACCCTCGGGGAATTCTTGTCTTGGTGTTCTCGAGCTAATCATGACCTCACCGAAGATCAATTATGCACATGAGGTGGACAAAGTCTGCAAAGCTCTTCAGGCTGTCAATCTAAGAAGTTCAGAGATTATAGATCACCCAAAGATCCAGATTTGCAATGAAGGTCGACAAAATGCGCTGGCCGAAATTTTGGAGGTACTCACAGTTGTATGTGAAACTCATAAATTACCATTAGCTCAAACATGGGTTCCGTGCAGGCATCGAAACGTGCTCGCCAACGGTGGAGGTTTCAAGAAAAGTTGTACTAGCTTTGATGGTAGTTGCATGGGACGGATTTGTATGTCTGTAACTGAAGTAGCATCCTATGTTGTTGATGCTCACATGTGGGGTTTTCGCGAGGCATGTTTAGAACACCATTTACAAAAGGGGCAAGGGGTTTCTGGGAGAGCGTTTTCGTCCCACAGTTCGTGTTTTTGTGGAGACATCACCCAATTCTGCAAGACCGAATACCCTTTGGTTCACTATGCACTCATGTTTGGATTAAAAAGCTGTTTTTCGATCTGTTTACGGAGCACGTTTACTGGAGATGATGAGTACATTCTAGAATTTTTTCTGCCACCCAGCATTGTTGATGATCAGGAACAAAAGATTCTGTTGGGTGCATTAATGGCAACAATGAAGCAGCATTTCTACTCTCTCAAAGTTGCTTCTGGAATCAAACTTGAGGAGGAAGGACTAGTCGAGATCGTTCAAGCATCGAGGAATGTAGGGTTCGAGTCTAGACTTGAGTACATTCAAATTCCCAAACCACCACCTGAGTCTGATGCCATGGTGAATGTAGGAGAGGTAGTTGCATTAGAAACCTTGCAACAACAATGTTTAATGGTTCATGATGCCCTGAAGTATGAAAAGAATACCGCTCGGTATGGGGAAAGCCACAACCCTGCTCCTCTCCCCCAGAATACGACATCGAAAAGGAAGCGAGGAAAAGCCGAGAAATCAATTAGTCTGGAGGTTCTTCAACAGTATTTTTCTGGCAGTCTAAAGGATGCTGCTAAAAGCCTTGGCGTTTGTCCCACAACAATGAAGCGTATCTGTAGGCAACATGGGATCTCACGGTGGCCATCTCGGAAGATCAACAAGGTGAATCGGTCTCTTTCAAAGCTAAAACGCGTGATTGAATCTGTTCAAGGGGCCGAAGGAGCATTCAGAATGTCTCCTTTGGCTACAAGTCCAGTTCATGTTGCTGTTAGTTCGGATTCTCATCCTTTAACGCCAGACGAGTTTAATCAGCAAAACTTTGTTGCTTCTCAATCCTCTGATCCTCAACATAAAGAAACAAACATCTCAGAAGCTAGACTGGAAGATCAATTAAAGAGGGGAGTGTTGAGTCCGGAAGAACCAATCTACGTGACGAATGGATTTCTACCGAAGCTTAGAAATGTCTTGAACAATTCGAAAACGGGAAGTGGATCACGGGAAGAGAGTGCTGGAACACCTACTTCTCATGGTTCATGCCAAGGTAGTCCCGCAAACGAAAGTCCACTTAGGAATAATCCCATTTCTATTCCACACCAAGAACATTGTGTAAGAAGAGAATCTCCTGAAGCAGCATTTCATCAGATAGATAACCTAAATGTATTGGTGCCTATTCGGGATACGCTCGTGATGGTTGAGCCCGAGGAACCATTTGTAGGAATGCTGATTAAAGATGCAGGAAGTTCTAAGGAGTTAAAAAATCTTTGTTCTTTTGTCGCTGATGCTGTTCTCTACGAGCAAGTACCCGAATTTCGCTGGCTCAACCCTCCTGATATAGCTCTGAGACAACCGCTGGACTCTATTTGTCACACAGTCCCTCATATATCAGCAATGAAAGAACCAAGGCGAATGACTATCAAGGCTACTTATAAGGAAGATATCATTCGATTTCGAATGTCCATGAGTTCTGGTATTGTGGAGTTAAGAGAAGAAGTGGCTAAGCGATTGAAATTGGAGGTTGGTACGTTCGATATCAAATACATAGATGATGATCGTGAATGGGTTCTTATTGCCTGTGATGCAGACCTACAAGAGTGTGTAGATATCTCAAAATCATCAGAACTTCAAGTTTACAGGGAACGTTAG 2517 43.7 MPLDNPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKWGGKLVLSTSGQPFVLDTQSNGLHQYRMISLTYMFAFDTDSDGYLGLPGRVFQQKLPEWTPNVQYYSSKEFPRLSYALHYNVQGTLALPVFEPSGNSCLGVLELIMTSPKINYAHEVDKVCKALQAVNLRSSEIIDHPKIQICNEGRQNALAEILEVLTVVCETHKLPLAQTWVPCRHRNVLANGGGFKKSCTSFDGSCMGRICMSVTEVASYVVDAHMWGFREACLEHHLQKGQGVSGRAFSSHSSCFCGDITQFCKTEYPLVHYALMFGLKSCFSICLRSTFTGDDEYILEFFLPPSIVDDQEQKILLGALMATMKQHFYSLKVASGIKLEEEGLVEIVQASRNVGFESRLEYIQIPKPPPESDAMVNVGEVVALETLQQQCLMVHDALKYEKNTARYGESHNPAPLPQNTTSKRKRGKAEKSISLEVLQQYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFRMSPLATSPVHVAVSSDSHPLTPDEFNQQNFVASQSSDPQHKETNISEARLEDQLKRGVLSPEEPIYVTNGFLPKLRNVLNNSKTGSGSREESAGTPTSHGSCQGSPANESPLRNNPISIPHQEHCVRRESPEAAFHQIDNLNVLVPIRDTLVMVEPEEPFVGMLIKDAGSSKELKNLCSFVADAVLYEQVPEFRWLNPPDIALRQPLDSICHTVPHISAMKEPRRMTIKATYKEDIIRFRMSMSSGIVELREEVAKRLKLEVGTFDIKYIDDDREWVLIACDADLQECVDISKSSELQVYRER 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5495140 5500231 - Sed0008415.3 Sed13g0767 734277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0767 838 MobiDBLite consensus disorder prediction 613 653 - -
Sed13g0767 838 MobiDBLite consensus disorder prediction 438 462 - -
Sed13g0767 838 CDD PB1_NLP 761 836 IPR034891 -
Sed13g0767 838 ProSiteProfiles PB1 domain profile. 760 838 IPR053793 -
Sed13g0767 838 PANTHER PROTEIN NLP8 4 831 IPR045012 GO:0003700(InterPro)
Sed13g0767 838 ProSiteProfiles RWP-RK domain profile. 450 533 IPR003035 -
Sed13g0767 838 Pfam NLP protein GAF domain 181 364 IPR055081 -
Sed13g0767 838 SMART PB1_new 760 837 IPR000270 GO:0005515(InterPro)
Sed13g0767 838 SUPERFAMILY CAD & PB1 domains 753 829 - -
Sed13g0767 838 MobiDBLite consensus disorder prediction 613 652 - -
Sed13g0767 838 Gene3D - 758 836 - -
Sed13g0767 838 Pfam RWP-RK domain 465 512 IPR003035 -
Sed13g0767 838 Pfam PB1 domain 761 830 IPR000270 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0767 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0767 Sed-Chr13:5495140 Sed13g2190 Sed-Chr13:26450993 6.90E-123 dispersed
Sed13g0766 Sed-Chr13:5495140 Sed13g0767 Sed-Chr13:5495140 0.00E+00 tandem
Sed13g0767 Sed-Chr13:5495140 Sed13g0768 Sed-Chr13:5495140 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g0953 . 180 981 NLP Transcription Factor Family AT1G64530 51.7 3.1e-214 742.7
Sed07g0954 . 106 907 NLP Transcription Factor Family AT1G64530 51.7 3.1e-214 742.7
Sed07g0955 . 67 868 NLP Transcription Factor Family AT1G64530 51.7 3.1e-214 742.7
Sed13g0765 . 143 931 NLP Transcription Factor Family AT1G64530 50.8 3.4e-213 739.2
Sed13g0768 . 67 855 NLP Transcription Factor Family AT1G64530 50.8 3.4e-213 739.2
Sed13g0766 . 143 903 NLP Transcription Factor Family AT1G64530 50.9 3.1e-206 716.1
Sed13g0767 . 67 827 NLP Transcription Factor Family AT1G64530 50.9 3.1e-206 716.1
Sed07g0953 . 259 981 NLP Transcription Factor Family AT4G24020 54.5 2.8e-199 693.0
Sed07g0954 . 185 907 NLP Transcription Factor Family AT4G24020 54.5 2.8e-199 693.0
Sed07g0955 . 146 868 NLP Transcription Factor Family AT4G24020 54.5 2.8e-199 693.0
Sed13g0765 . 222 931 NLP Transcription Factor Family AT4G24020 52.5 2.3e-193 673.3
Sed13g0768 . 146 855 NLP Transcription Factor Family AT4G24020 52.5 2.3e-193 673.3
Sed13g0766 . 222 912 NLP Transcription Factor Family AT4G24020 51.8 2.6e-184 643.3
Sed13g0767 . 146 836 NLP Transcription Factor Family AT4G24020 51.8 2.6e-184 643.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40383 PF00564 PB1 2.60E-17 CL0072 Sed TF