Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0775 ATGGCGAATCGTGGAGGGGGGTCGTTTCCACCCTCGGATGTTTTATCTCAAGGTTGGGGAGGAGATGGGCTTTACACTGAGCTTTGGAAGGCCTCGGCTGGGCCTCTTGTGGAAGTTCCTAGAGTTCATGAAAAGGTTTTCTATTTTCCTCAAGGCCATATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTGAATCAGAAGCTTCCTTCGTTTAATCTCTCCTCCAAAGTTCTCTGTCGTGTTGTTGATGTTCGGCTACTGGCAGAGCAGGAAACAGATGAGGTTTATGCACGGATAACTTTAATGCCAGAATCAGATCAAGAGGAGCCACCCTGCCCGGATCCTTTGCCCCCGGACTGTCGTAAACCGAAAGTCCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGAGGGTTCTCTGTGCTTCGCAAACATGCCACCGAATGCTTGCCTCCATTGGATATGACCCAGCAGACCCCGACACAGGAACTCGTAGCGAAAGATCTTCATGGTTACGAGTGGCGATTCAAGCATATATTCAGGGGGCAACCGCGAAGGCACTTGTTAACGACAGGATGGAGCACCTTTGTTACTTCTAAGAGATTAGTTGCTGGGGACTCTTTTGTGTTCTTGAGGGGGGAAAATGGGGAACTCCGAGTTGGAGTGAGGCGTCTTGCTCGCCAACAAAGCAGCATGCCTTCATCTGTGATTTCAAGCCACAGCATGCACATAGGAGTGCTTGCTACTGCATCTCATGCCGTTGCAACTAAAACTCGCTTTCTTGTCTATTATAAGCCAAGGGCGAGCCAGTTTATCGTATCATTAAATAAGTATATTGAAGCGACGAACAGTAAGTTCCTAGTCGGGATGAGGTTCAAGATGAGGTTTGAGGGAGAGGAGTCTCCAGAGAGAAGGTTTTCGGGCACCATAATTGGAGTTGATGACTTATCTCCTCAGTGGTCTGATTCGAAATGGCGATCACTAAAAGTTCAATGGGATGAACTTGCATCTGTTCAGAGACCTGAGAGGGTTTCGCCATGGGAGATTGAACCCTTTGTGGCTCCTATGTCTCCAAGCATTCTGCCATCGGTTTCCGTAAAGAATAAAAGGCCTCGTCCTCCACTCGACATTCCAGATTCTGATAATTCAACCGTAGCAGCTCTTCGATTTCCTGGTTTGACTCAATCACATGATGATAGAACACAACTTAGTGTTGCTGCTGCCCCTGACATTAAAAGATTTGATAACCATGCAACATGGCATTACAAGCAAGCAGATACTAGCAACAATGGGGGTTCCTGGTCAACTTCCCCAAGTGAAATTGTTTCTCAGCATCTGTTACAGGATTTGACCGAAGACCCCAAAAGTAATTCGGTTTGGTCAATGGTCTTCCCCGAAGCACCAGCTGCACACTCGGCATGTCCAACTCCACGCATATCGAATCCAAAGAGTGACCAAATAAATGACGCTGGCGAAAAGGGGAGGAAAAGTGAGGCAACTCCGAGCTATCGCTTGTTTGGGATCGATCTTAATTGTTCCAAGAGTTCAATTCCACCTGAAAGGGCACTTGAACAACAGATTAGCACACCCAACATAATTACTGAAAGCCATGTCAACACCTTGCCATCATCTAAAGCAGAGCAGAACTCAGACCTGCCGAAGGCTTCAAAAGAAAGAAAATTAGGACTTTTACAAGCACCTCCTAAAGAGATCCAGCACAAGCATAGCGGCTTGACCAACAACCGAAGCCGTACCAAGGTTCAAATGCAAGGAATGGCTGTCGGGCGTGCGGTGGACCTTACTACATTGGAAGGGTATAGCCAACTCATTGACGAACTAGAAAAGATGTTCGATATCAAGGGGGAACTGCGCCCTCGTGATAAGTGGGAGATTGTCTTCACCGATGATGAAGGAGATACGATGCTCATGGGCGATTACCCGTGGCAGGAATTCTGTAACATGGTGAGAAGAATATATATATGGTCAAGTCAAGACGTGAAGACGAGTTCGGGTAGCAAGCTTACAATGTCTACAATCGAATGCGATGGGATGGGAATAACCTCAGAGTCGGCCGATAGCTGA 2097 47.11 MANRGGGSFPPSDVLSQGWGGDGLYTELWKASAGPLVEVPRVHEKVFYFPQGHMEQLEASTNQELNQKLPSFNLSSKVLCRVVDVRLLAEQETDEVYARITLMPESDQEEPPCPDPLPPDCRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLARQQSSMPSSVISSHSMHIGVLATASHAVATKTRFLVYYKPRASQFIVSLNKYIEATNSKFLVGMRFKMRFEGEESPERRFSGTIIGVDDLSPQWSDSKWRSLKVQWDELASVQRPERVSPWEIEPFVAPMSPSILPSVSVKNKRPRPPLDIPDSDNSTVAALRFPGLTQSHDDRTQLSVAAAPDIKRFDNHATWHYKQADTSNNGGSWSTSPSEIVSQHLLQDLTEDPKSNSVWSMVFPEAPAAHSACPTPRISNPKSDQINDAGEKGRKSEATPSYRLFGIDLNCSKSSIPPERALEQQISTPNIITESHVNTLPSSKAEQNSDLPKASKERKLGLLQAPPKEIQHKHSGLTNNRSRTKVQMQGMAVGRAVDLTTLEGYSQLIDELEKMFDIKGELRPRDKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKTSSGSKLTMSTIECDGMGITSESADS 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5620801 5625090 - Sed0020044.1 Sed13g0775 734285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0775 698 MobiDBLite consensus disorder prediction 369 388 - -
Sed13g0775 698 Pfam Auxin response factor 255 334 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed13g0775 698 SUPERFAMILY CAD & PB1 domains 584 663 - -
Sed13g0775 698 CDD B3_DNA 127 229 IPR003340 GO:0003677(InterPro)
Sed13g0775 698 ProSiteProfiles PB1 domain profile. 587 668 IPR053793 -
Sed13g0775 698 SUPERFAMILY DNA-binding pseudobarrel domain 122 258 IPR015300 -
Sed13g0775 698 FunFam Auxin response factor 290 361 - -
Sed13g0775 698 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677(InterPro)
Sed13g0775 698 Gene3D - 290 361 - -
Sed13g0775 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 675 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed13g0775 698 Gene3D - 583 675 - -
Sed13g0775 698 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677(InterPro)
Sed13g0775 698 Gene3D - 126 230 IPR015300 -
Sed13g0775 698 MobiDBLite consensus disorder prediction 475 505 - -
Sed13g0775 698 FunFam Auxin response factor 127 231 - -
Sed13g0775 698 Pfam AUX/IAA family 577 623 IPR033389 -
Sed13g0775 698 Pfam AUX/IAA family 634 670 IPR033389 -
Sed13g0775 698 SMART B3_2 129 231 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0692 Sed-Chr5:5175632 Sed13g0775 Sed-Chr13:5620801 1.00E-225 dispersed
Sed11g1996 Sed-Chr11:34122701 Sed13g0775 Sed-Chr13:5620801 5.70E-157 dispersed
Sed11g1997 Sed-Chr11:34122701 Sed13g0775 Sed-Chr13:5620801 5.70E-157 dispersed
Sed13g0775 Sed-Chr13:5620801 Sed14g1598 Sed-Chr14:24132416 6.60E-103 dispersed
Sed02g0014 Sed-Chr2:3651767 Sed13g0775 Sed-Chr13:5620801 1.70E-170 transposed
Sed09g0530 Sed-Chr9:5366658 Sed13g0775 Sed-Chr13:5620801 1.60E-207 transposed
Sed01g3807 Sed-Chr1:67230083 Sed13g0775 Sed-Chr13:5620801 1.80E-214 wgd
Sed13g0775 Sed-Chr13:5620801 Sed07g0958 Sed-Chr7:7006966 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40385 PF02362 B3 6.90E-22 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0775 K14486 - csv:101213942 1090.87