Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0816 ATGGCTTCGAATACTACAGCAGTTACCAAATGTCCATCTCCAATGAAAGCAACATCGAATGGCATTTTCCAGGGCGATAATCCTCTTGATTTTGCTCTTCCTCTCGTCATTCTGCAAATATGTTTGGTAGTCGTACTTACTCGTGGCCTTGCCTTTCTTTTGAGGCCGTTGAAACAGCCCCGAGTGATTGGAGAAATTATTGGAGGAATACTTCTTGGTCCATCAGCTCTTGGACGTAACAAGGACTTTCTTCATACAATATTTCCGTCCAATAGTATCACATTGTTAGATACCATAGCGAACATTGGATTACTATTCTTTCTCTTCCTTGTGGGTCTTGAGTTAGATCTAAAGTCAATACGTCGTACTGGAAAAAAGGCTCTTGGCATTGCCATTACTGGAATTTGTCTTCCCTTTGCATTAGGAATTGGATCATCATTTGTTCTCCGCGAGACCATATCCAAAGGTGTAAATGCTTCTGCATTTCTCATATTCATGGGCGTTGCACTTTCGATAACAGCATTTCCCGTCTTAGCTCGTATTCTTGCCGAGCTTAAACTTCTAACCACTGATGTTGGCAGGATGGCTATGTCTGCTGCAGCGGTGAATGACGTAGCTGCATGGATTCTCCTTGCTCTTGCCATTGCATTATCGGGTTCCGATAAGTCTCCCCTAACTGCAGTTTGGGTCCTCTTATCTGGCTGCGGTTTCGTCATGGCTGCTATCGTCATTTTATCTCCAGTTTTTAAATGGATGACCAAACAATGTTTTCAAGGGGAGCCAGTGCGCGAGATCTACATATGTGCTACATTAGCTATTGTTTTAGCTGCTGGATTTGTCACAGATTTTATTGGGATACATGCTATGTTTGGAGCTTTTGTTGTTGGGGTCATAGTTCCAAAGGATGGACCATTAGTAGGTGCTTTGGTAGAGAAAATAGAGGATCTTGTTTCTGGTTTATTTCTGCCTCTCTACTTTGTGTCAAGTGGATTGAAGACTAATGTAGCCACAATTCAGGGAGCACAGTCATGGGGTCTTCTAATTTTAGTTATAGTTACTGCTTGTTTCGGAAAAATCTTGGGCACTTTTCTCGTGTCCGTTCTTTGTAAAGTACCGGTTCGTGAGGCTCTCGCATTAGGATTTCTAATGAACACAAAAGGTTTGGTGGAGCTTATTGTTCTCAATATTGGAAAAGACAGAAAGGTTTTGAATGATCAAACCTTTGCAATAATGATTCTAATGGCTCTTTTTACTACGTTCATTACCACTCCCCTTGTCATTGCTGTATATAAGCCGGCGAGGAGTGATAAATTAGCCGATTATAAGCATAGAAAAATCGAACGAAAAAACAAGAATACACAACTTAGGATTTTGACTTGTTTCCATAGTGCAAGAAACATTCCTTCAATTATAAATCTGCTTGAGGCCTCAAGAGGAGTTGAGAAGGGTGGAAAACTTTGTGTTTATGCAATGCATCTCATGGAGCTATCCGAGAGATCCTCAGCCATTTTAATGGTACATAAGGCCAGGAAAAATGGGCTGCCTTTCTGGAACAAGGGCCTGCGGTCGGATTCCAACCATGTTATCGTTGCGTTTGAGGCCTACCAACAACTGAGCAGAGTATTCATCCGGCCGATGACGGCCATTTCCTCCATGACCGATATACATGAAGATATTTGTGCTACTGCTAAAAGGAAAAGAACTGCAATCATAATTCTTCCTTTCCACAAGCATCAGAGGATGGATGGTTCACTCGAGACTACTCGAAGCAGCATTCGCCTTGTTAATCAGAATGTTCTTGAGCACGCTCCATGTTCAGTTGGAATTCTCATTGATCGTGGGTTGGGTGGAACAACCCATATTTCGTCAAGCCATGTTTCGCTTTTCATCACTGTTCTATTCTTTGGTGGCAGAGATGATCGTGAAGCACTTTCTTATGGAGTTCGCATGGCCGAGCACCCTGGCATTAGATTGATGGTAATTCGTTTCTGTATTGAACCCGAATCTGTTGGGGAGATAATCAGTGCTGATACTGTTGGGAATTCTTCTGCATCAACAGTTTCTCAGGATGATGAGTTTCTTTCTGAATTCAAGCACGATGTGGACGAAAACGATTCCATCATATATGAGGAGAAAACCATAAAAAGTGCTGCAGATGCAATGGATACATTGCAGGAGCTGAAAAGCTGCAATCTATATATCGTTGGCCGAACCCCGGATATCAACGCAACATTTGCTTTAAACAGAAGTGACTGTCCGGAACTTGGTCCAGTTGGGAACCTGTTGACTTCACCAAACTTCTCGATTGCAGCATCGGTTTTGGTGGTGCAGCAATATTGTTCCGAGTTATCAGAAAATTCGGCTTTAGATTCTGCTGAAGGAGAATCAGAATCAGCATAG 2400 42.38 MASNTTAVTKCPSPMKATSNGIFQGDNPLDFALPLVILQICLVVVLTRGLAFLLRPLKQPRVIGEIIGGILLGPSALGRNKDFLHTIFPSNSITLLDTIANIGLLFFLFLVGLELDLKSIRRTGKKALGIAITGICLPFALGIGSSFVLRETISKGVNASAFLIFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGSDKSPLTAVWVLLSGCGFVMAAIVILSPVFKWMTKQCFQGEPVREIYICATLAIVLAAGFVTDFIGIHAMFGAFVVGVIVPKDGPLVGALVEKIEDLVSGLFLPLYFVSSGLKTNVATIQGAQSWGLLILVIVTACFGKILGTFLVSVLCKVPVREALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMILMALFTTFITTPLVIAVYKPARSDKLADYKHRKIERKNKNTQLRILTCFHSARNIPSIINLLEASRGVEKGGKLCVYAMHLMELSERSSAILMVHKARKNGLPFWNKGLRSDSNHVIVAFEAYQQLSRVFIRPMTAISSMTDIHEDICATAKRKRTAIIILPFHKHQRMDGSLETTRSSIRLVNQNVLEHAPCSVGILIDRGLGGTTHISSSHVSLFITVLFFGGRDDREALSYGVRMAEHPGIRLMVIRFCIEPESVGEIISADTVGNSSASTVSQDDEFLSEFKHDVDENDSIIYEEKTIKSAADAMDTLQELKSCNLYIVGRTPDINATFALNRSDCPELGPVGNLLTSPNFSIAASVLVVQQYCSELSENSALDSAEGESESA 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6035580 6040421 + Sed0022850.2 Sed13g0816 734326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0816 799 Pfam Sodium/hydrogen exchanger family 47 425 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Sed13g0816 799 Gene3D - 35 438 IPR038770 -
Sed13g0816 799 PANTHER CATION/H + ANTIPORTER 11 787 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Sed13g0816 799 FunFam Cation/H(+) antiporter 15 35 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0021 Sed-Chr1:332821 Sed13g0816 Sed-Chr13:6035580 2.00E-207 dispersed
Sed05g3866 Sed-Chr5:46187082 Sed13g0816 Sed-Chr13:6035580 1.90E-199 dispersed
Sed07g0639 Sed-Chr7:4814645 Sed13g0816 Sed-Chr13:6035580 4.70E-89 dispersed
Sed07g1580 Sed-Chr7:12659718 Sed13g0816 Sed-Chr13:6035580 2.60E-289 dispersed
Sed07g1581 Sed-Chr7:12694959 Sed13g0816 Sed-Chr13:6035580 1.20E-27 dispersed
Sed09g1353 Sed-Chr9:37589974 Sed13g0816 Sed-Chr13:6035580 7.10E-85 dispersed
Sed13g0816 Sed-Chr13:6035580 Sed13g0818 Sed-Chr13:6036165 0.00E+00 dispersed
Sed13g0816 Sed-Chr13:6035580 Sed13g0817 Sed-Chr13:6036165 0.00E+00 tandem
Sed13g0816 Sed-Chr13:6035580 Sed07g1579 Sed-Chr7:12630883 3.00E-301 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0816 K26731 - csv:101223205 1372.45