Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0816 ATGGCTTCGAATACTACAGCAGTTACCAAATGTCCATCTCCAATGAAAGCAACATCGAATGGCATTTTCCAGGGCGATAATCCTCTTGATTTTGCTCTTCCTCTCGTCATTCTGCAAATATGTTTGGTAGTCGTACTTACTCGTGGCCTTGCCTTTCTTTTGAGGCCGTTGAAACAGCCCCGAGTGATTGGAGAAATTATTGGAGGAATACTTCTTGGTCCATCAGCTCTTGGACGTAACAAGGACTTTCTTCATACAATATTTCCGTCCAATAGTATCACATTGTTAGATACCATAGCGAACATTGGATTACTATTCTTTCTCTTCCTTGTGGGTCTTGAGTTAGATCTAAAGTCAATACGTCGTACTGGAAAAAAGGCTCTTGGCATTGCCATTACTGGAATTTGTCTTCCCTTTGCATTAGGAATTGGATCATCATTTGTTCTCCGCGAGACCATATCCAAAGGTGTAAATGCTTCTGCATTTCTCATATTCATGGGCGTTGCACTTTCGATAACAGCATTTCCCGTCTTAGCTCGTATTCTTGCCGAGCTTAAACTTCTAACCACTGATGTTGGCAGGATGGCTATGTCTGCTGCAGCGGTGAATGACGTAGCTGCATGGATTCTCCTTGCTCTTGCCATTGCATTATCGGGTTCCGATAAGTCTCCCCTAACTGCAGTTTGGGTCCTCTTATCTGGCTGCGGTTTCGTCATGGCTGCTATCGTCATTTTATCTCCAGTTTTTAAATGGATGACCAAACAATGTTTTCAAGGGGAGCCAGTGCGCGAGATCTACATATGTGCTACATTAGCTATTGTTTTAGCTGCTGGATTTGTCACAGATTTTATTGGGATACATGCTATGTTTGGAGCTTTTGTTGTTGGGGTCATAGTTCCAAAGGATGGACCATTAGTAGGTGCTTTGGTAGAGAAAATAGAGGATCTTGTTTCTGGTTTATTTCTGCCTCTCTACTTTGTGTCAAGTGGATTGAAGACTAATGTAGCCACAATTCAGGGAGCACAGTCATGGGGTCTTCTAATTTTAGTTATAGTTACTGCTTGTTTCGGAAAAATCTTGGGCACTTTTCTCGTGTCCGTTCTTTGTAAAGTACCGGTTCGTGAGGCTCTCGCATTAGGATTTCTAATGAACACAAAAGGTTTGGTGGAGCTTATTGTTCTCAATATTGGAAAAGACAGAAAGGTTTTGAATGATCAAACCTTTGCAATAATGATTCTAATGGCTCTTTTTACTACGTTCATTACCACTCCCCTTGTCATTGCTGTATATAAGCCGGCGAGGAGTGATAAATTAGCCGATTATAAGCATAGAAAAATCGAACGAAAAAACAAGAATACACAACTTAGGATTTTGACTTGTTTCCATAGTGCAAGAAACATTCCTTCAATTATAAATCTGCTTGAGGCCTCAAGAGGAGTTGAGAAGGGTGGAAAACTTTGTGTTTATGCAATGCATCTCATGGAGCTATCCGAGAGATCCTCAGCCATTTTAATGGTACATAAGGCCAGGAAAAATGGGCTGCCTTTCTGGAACAAGGGCCTGCGGTCGGATTCCAACCATGTTATCGTTGCGTTTGAGGCCTACCAACAACTGAGCAGAGTATTCATCCGGCCGATGACGGCCATTTCCTCCATGACCGATATACATGAAGATATTTGTGCTACTGCTAAAAGGAAAAGAACTGCAATCATAATTCTTCCTTTCCACAAGCATCAGAGGATGGATGGTTCACTCGAGACTACTCGAAGCAGCATTCGCCTTGTTAATCAGAATGTTCTTGAGCACGCTCCATGTTCAGTTGGAATTCTCATTGATCGTGGGTTGGGTGGAACAACCCATATTTCGTCAAGCCATGTTTCGCTTTTCATCACTGTTCTATTCTTTGGTGGCAGAGATGATCGTGAAGCACTTTCTTATGGAGTTCGCATGGCCGAGCACCCTGGCATTAGATTGATGGTAATTCGTTTCTGTATTGAACCCGAATCTGTTGGGGAGATAATCAGTGCTGATACTGTTGGGAATTCTTCTGCATCAACAGTTTCTCAGGATGATGAGTTTCTTTCTGAATTCAAGCACGATGTGGACGAAAACGATTCCATCATATATGAGGAGAAAACCATAAAAAGTGCTGCAGATGCAATGGATACATTGCAGGAGCTGAAAAGCTGCAATCTATATATCGTTGGCCGAACCCCGGATATCAACGCAACATTTGCTTTAAACAGAAGTGACTGTCCGGAACTTGGTCCAGTTGGGAACCTGTTGACTTCACCAAACTTCTCGATTGCAGCATCGGTTTTGGTGGTGCAGCAATATTGTTCCGAGTTATCAGAAAATTCGGCTTTAGATTCTGCTGAAGGAGAATCAGAATCAGCATAG 2400 42.38 MASNTTAVTKCPSPMKATSNGIFQGDNPLDFALPLVILQICLVVVLTRGLAFLLRPLKQPRVIGEIIGGILLGPSALGRNKDFLHTIFPSNSITLLDTIANIGLLFFLFLVGLELDLKSIRRTGKKALGIAITGICLPFALGIGSSFVLRETISKGVNASAFLIFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGSDKSPLTAVWVLLSGCGFVMAAIVILSPVFKWMTKQCFQGEPVREIYICATLAIVLAAGFVTDFIGIHAMFGAFVVGVIVPKDGPLVGALVEKIEDLVSGLFLPLYFVSSGLKTNVATIQGAQSWGLLILVIVTACFGKILGTFLVSVLCKVPVREALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMILMALFTTFITTPLVIAVYKPARSDKLADYKHRKIERKNKNTQLRILTCFHSARNIPSIINLLEASRGVEKGGKLCVYAMHLMELSERSSAILMVHKARKNGLPFWNKGLRSDSNHVIVAFEAYQQLSRVFIRPMTAISSMTDIHEDICATAKRKRTAIIILPFHKHQRMDGSLETTRSSIRLVNQNVLEHAPCSVGILIDRGLGGTTHISSSHVSLFITVLFFGGRDDREALSYGVRMAEHPGIRLMVIRFCIEPESVGEIISADTVGNSSASTVSQDDEFLSEFKHDVDENDSIIYEEKTIKSAADAMDTLQELKSCNLYIVGRTPDINATFALNRSDCPELGPVGNLLTSPNFSIAASVLVVQQYCSELSENSALDSAEGESESA 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6035580 6040421 + Sed0022850.2 Sed13g0816 734326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0816 799 Pfam Sodium/hydrogen exchanger family 47 425 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Sed13g0816 799 Gene3D - 35 438 IPR038770 -
Sed13g0816 799 PANTHER CATION/H + ANTIPORTER 11 787 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Sed13g0816 799 FunFam Cation/H(+) antiporter 15 35 437 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0816 K26731 - - csv:101223205 1372.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0021 Sed-Chr1:332821 Sed13g0816 Sed-Chr13:6035580 2.00E-207 dispersed
Sed05g3866 Sed-Chr5:46187082 Sed13g0816 Sed-Chr13:6035580 1.90E-199 dispersed
Sed07g0639 Sed-Chr7:4814645 Sed13g0816 Sed-Chr13:6035580 4.70E-89 dispersed
Sed07g1580 Sed-Chr7:12659718 Sed13g0816 Sed-Chr13:6035580 2.60E-289 dispersed
Sed07g1581 Sed-Chr7:12694959 Sed13g0816 Sed-Chr13:6035580 1.20E-27 dispersed
Sed09g1353 Sed-Chr9:37589974 Sed13g0816 Sed-Chr13:6035580 7.10E-85 dispersed
Sed13g0816 Sed-Chr13:6035580 Sed13g0818 Sed-Chr13:6036165 0.00E+00 dispersed
Sed13g0816 Sed-Chr13:6035580 Sed13g0817 Sed-Chr13:6036165 0.00E+00 tandem
Sed13g0816 Sed-Chr13:6035580 Sed07g1579 Sed-Chr7:12630883 3.00E-301 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g0021 . 11 815 Antiporter Super Family AT2G13620 70.4 0.0e+00 1137.1
Sed05g3866 . 11 799 Antiporter Super Family AT2G13620 69.9 0.0e+00 1101.7
Sed14g0469 . 76 810 Antiporter Super Family AT3G53720 67.9 3.7e-280 961.8
Sed13g0816 . 83 796 Antiporter Super Family AT3G53720 50.3 6.9e-186 648.7
Sed13g0817 . 83 796 Antiporter Super Family AT3G53720 50.3 6.9e-186 648.7
Sed13g0818 . 83 796 Antiporter Super Family AT3G53720 50.3 6.9e-186 648.7
Sed13g0816 . 1 779 Antiporter Super Family AT5G41610 69.3 2.7e-310 1062.0
Sed13g0817 . 1 779 Antiporter Super Family AT5G41610 69.3 2.7e-310 1062.0
Sed13g0818 . 1 779 Antiporter Super Family AT5G41610 69.3 2.7e-310 1062.0
Sed07g1579 . 1 784 Antiporter Super Family AT5G41610 68.1 4.9e-299 1024.6
Sed07g1580 . 3 760 Antiporter Super Family AT5G41610 65.8 1.1e-287 986.9
Sed14g0469 . 8 816 Antiporter Super Family AT5G41610 50.4 1.6e-209 727.2
Sed07g1579 . 10 782 Antiporter Super Family AT4G23700 65.5 2.5e-287 985.7
Sed07g1580 . 3 777 Antiporter Super Family AT4G23700 64.7 9.0e-285 977.2
Sed13g0816 . 9 779 Antiporter Super Family AT4G23700 64.8 3.4e-284 975.3
Sed13g0817 . 9 779 Antiporter Super Family AT4G23700 64.8 3.4e-284 975.3
Sed13g0818 . 9 779 Antiporter Super Family AT4G23700 64.8 3.4e-284 975.3
Sed13g0816 . 3 779 Antiporter Super Family AT3G17630 64.6 6.5e-280 961.1
Sed13g0817 . 3 779 Antiporter Super Family AT3G17630 64.6 6.5e-280 961.1
Sed13g0818 . 3 779 Antiporter Super Family AT3G17630 64.6 6.5e-280 961.1
Sed07g1579 . 4 782 Antiporter Super Family AT3G17630 63.2 8.5e-272 934.1
Sed07g1580 . 3 758 Antiporter Super Family AT3G17630 63.6 9.1e-266 914.1
Sed14g0469 . 2 798 Antiporter Super Family AT3G17630 51.3 1.6e-206 717.2
Sed07g1580 . 3 763 Antiporter Super Family AT1G64170 59.2 6.2e-238 821.6
Sed07g1579 . 15 784 Antiporter Super Family AT1G64170 57.4 1.1e-237 820.8
Sed13g0816 . 1 782 Antiporter Super Family AT1G64170 56.1 1.4e-234 810.4
Sed13g0817 . 1 782 Antiporter Super Family AT1G64170 56.1 1.4e-234 810.4
Sed13g0818 . 1 782 Antiporter Super Family AT1G64170 56.1 1.4e-234 810.4
Sed01g0021 . 11 815 Antiporter Super Family AT2G13620 70.4 0.0e+00 1137.1
Sed05g3866 . 11 799 Antiporter Super Family AT2G13620 69.9 0.0e+00 1101.7
Sed07g1580 . 3 763 Antiporter Super Family AT1G64170 59.2 6.2e-238 821.6
Sed07g1579 . 15 784 Antiporter Super Family AT1G64170 57.4 1.1e-237 820.8
Sed13g0816 . 1 782 Antiporter Super Family AT1G64170 56.1 1.4e-234 810.4
Sed13g0817 . 1 782 Antiporter Super Family AT1G64170 56.1 1.4e-234 810.4
Sed13g0818 . 1 782 Antiporter Super Family AT1G64170 56.1 1.4e-234 810.4
Sed07g1579 . 10 782 Antiporter Super Family AT4G23700 65.5 2.5e-287 985.7
Sed07g1580 . 3 777 Antiporter Super Family AT4G23700 64.7 9.0e-285 977.2
Sed13g0816 . 9 779 Antiporter Super Family AT4G23700 64.8 3.4e-284 975.3
Sed13g0817 . 9 779 Antiporter Super Family AT4G23700 64.8 3.4e-284 975.3
Sed13g0818 . 9 779 Antiporter Super Family AT4G23700 64.8 3.4e-284 975.3
Sed13g0816 . 1 779 Antiporter Super Family AT5G41610 69.3 2.7e-310 1062.0
Sed13g0817 . 1 779 Antiporter Super Family AT5G41610 69.3 2.7e-310 1062.0
Sed13g0818 . 1 779 Antiporter Super Family AT5G41610 69.3 2.7e-310 1062.0
Sed07g1579 . 1 784 Antiporter Super Family AT5G41610 68.1 4.9e-299 1024.6
Sed07g1580 . 3 760 Antiporter Super Family AT5G41610 65.8 1.1e-287 986.9
Sed14g0469 . 8 816 Antiporter Super Family AT5G41610 50.4 1.6e-209 727.2
Sed13g0816 . 3 779 Antiporter Super Family AT3G17630 64.6 6.5e-280 961.1
Sed13g0817 . 3 779 Antiporter Super Family AT3G17630 64.6 6.5e-280 961.1
Sed13g0818 . 3 779 Antiporter Super Family AT3G17630 64.6 6.5e-280 961.1
Sed07g1579 . 4 782 Antiporter Super Family AT3G17630 63.2 8.5e-272 934.1
Sed07g1580 . 3 758 Antiporter Super Family AT3G17630 63.6 9.1e-266 914.1
Sed14g0469 . 2 798 Antiporter Super Family AT3G17630 51.3 1.6e-206 717.2
Sed14g0469 . 76 810 Antiporter Super Family AT3G53720 67.9 3.7e-280 961.8
Sed13g0816 . 83 796 Antiporter Super Family AT3G53720 50.3 6.9e-186 648.7
Sed13g0817 . 83 796 Antiporter Super Family AT3G53720 50.3 6.9e-186 648.7
Sed13g0818 . 83 796 Antiporter Super Family AT3G53720 50.3 6.9e-186 648.7
Sed09g1353 . 47 791 Antiporter Super Family AT3G52080 53.9 3.3e-231 799.3
Sed07g0639 . 30 787 Antiporter Super Family AT3G52080 53.7 1.2e-230 797.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000528 2 8 3 3 2 4 4 4 4 4 4 4 4 3 3 4 4 5 2 4 4 2 2 3 4 4 2 5 5 5 111