Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0817 ATGGCTTCGAATACTACAGCAGTTACCAAATGTCCATCTCCAATGAAAGCAACATCGAATGGCATTTTCCAGGGCGATAATCCTCTTGATTTTGCTCTTCCTCTCGTCATTCTGCAAATATGTTTGGTAGTCGTACTTACTCGTGGCCTTGCCTTTCTTTTGAGGCCGTTGAAACAGCCCCGAGTGATTGGAGAAATTATTGGAGGAATACTTCTTGGTCCATCAGCTCTTGGACGTAACAAGGACTTTCTTCATACAATATTTCCGTCCAATAGTATCACATTGTTAGATACCATAGCGAACATTGGATTACTATTCTTTCTCTTCCTTGTGGGTCTTGAGTTAGATCTAAAGTCAATACGTCGTACTGGAAAAAAGGCTCTTGGCATTGCCATTACTGGAATTTGTCTTCCCTTTGCATTAGGAATTGGATCATCATTTGTTCTCCGCGAGACCATATCCAAAGGTGTAAATGCTTCTGCATTTCTCATATTCATGGGCGTTGCACTTTCGATAACAGCATTTCCCGTCTTAGCTCGTATTCTTGCCGAGCTTAAACTTCTAACCACTGATGTTGGCAGGATGGCTATGTCTGCTGCAGCGGTGAATGACGTAGCTGCATGGATTCTCCTTGCTCTTGCCATTGCATTATCGGGTTCCGATAAGTCTCCCCTAACTGCAGTTTGGGTCCTCTTATCTGGCTGCGGTTTCGTCATGGCTGCTATCGTCATTTTATCTCCAGTTTTTAAATGGATGACCAAACAATGTTTTCAAGGGGAGCCAGTGCGCGAGATCTACATATGTGCTACATTAGCTATTGTTTTAGCTGCTGGATTTGTCACAGATTTTATTGGGATACATGCTATGTTTGGAGCTTTTGTTGTTGGGGTCATAGTTCCAAAGGATGGACCATTAGTAGGTGCTTTGGTAGAGAAAATAGAGGATCTTGTTTCTGGTTTATTTCTGCCTCTCTACTTTGTGTCAAGTGGATTGAAGACTAATGTAGCCACAATTCAGGGAGCACAGTCATGGGGTCTTCTAATTTTAGTTATAGTTACTGCTTGTTTCGGAAAAATCTTGGGCACTTTTCTCGTGTCCGTTCTTTGTAAAGTACCGGTTCGTGAGGCTCTCGCATTAGGATTTCTAATGAACACAAAAGGTTTGGTGGAGCTTATTGTTCTCAATATTGGAAAAGACAGAAAGGTTTTGAATGATCAAACCTTTGCAATAATGATTCTAATGGCTCTTTTTACTACGTTCATTACCACTCCCCTTGTCATTGCTGTATATAAGCCGGCGAGGAGTGATAAATTAGCCGATTATAAGCATAGAAAAATCGAACGAAAAAACAAGAATACACAACTTAGGATTTTGACTTGTTTCCATAGTGCAAGAAACATTCCTTCAATTATAAATCTGCTTGAGGCCTCAAGAGGAGTTGAGAAGGGTGGAAAACTTTGTGTTTATGCAATGCATCTCATGGAGCTATCCGAGAGATCCTCAGCCATTTTAATGGTACATAAGGCCAGGAAAAATGGGCTGCCTTTCTGGAACAAGGGCCTGCGGTCGGATTCCAACCATGTTATCGTTGCGTTTGAGGCCTACCAACAACTGAGCAGAGTATTCATCCGGCCGATGACGGCCATTTCCTCCATGACCGATATACATGAAGATATTTGTGCTACTGCTAAAAGGAAAAGAACTGCAATCATAATTCTTCCTTTCCACAAGCATCAGAGGATGGATGGTTCACTCGAGACTACTCGAAGCAGCATTCGCCTTGTTAATCAGAATGTTCTTGAGCACGCTCCATGTTCAGTTGGAATTCTCATTGATCGTGGGTTGGGTGGAACAACCCATATTTCGTCAAGCCATGTTTCGCTTTTCATCACTGTTCTATTCTTTGGTGGCAGAGATGATCGTGAAGCACTTTCTTATGGAGTTCGCATGGCCGAGCACCCTGGCATTAGATTGATGGTAATTCGTTTCTGTATTGAACCCGAATCTGTTGGGGAGATAATCAGTGCTGATACTGTTGGGAATTCTTCTGCATCAACAGTTTCTCAGGATGATGAGTTTCTTTCTGAATTCAAGCACGATGTGGACGAAAACGATTCCATCATATATGAGGAGAAAACCATAAAAAGTGCTGCAGATGCAATGGATACATTGCAGGAGCTGAAAAGCTGCAATCTATATATCGTTGGCCGAACCCCGGATATCAACGCAACATTTGCTTTAAACAGAAGTGACTGTCCGGAACTTGGTCCAGTTGGGAACCTGTTGACTTCACCAAACTTCTCGATTGCAGCATCGGTTTTGGTGGTGCAGCAATATTGTTCCGAGTTATCAGAAAATTCGGCTTTAGATTCTGCTGAAGGAGAATCAGAATCAGCATAG 2400 42.38 MASNTTAVTKCPSPMKATSNGIFQGDNPLDFALPLVILQICLVVVLTRGLAFLLRPLKQPRVIGEIIGGILLGPSALGRNKDFLHTIFPSNSITLLDTIANIGLLFFLFLVGLELDLKSIRRTGKKALGIAITGICLPFALGIGSSFVLRETISKGVNASAFLIFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGSDKSPLTAVWVLLSGCGFVMAAIVILSPVFKWMTKQCFQGEPVREIYICATLAIVLAAGFVTDFIGIHAMFGAFVVGVIVPKDGPLVGALVEKIEDLVSGLFLPLYFVSSGLKTNVATIQGAQSWGLLILVIVTACFGKILGTFLVSVLCKVPVREALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMILMALFTTFITTPLVIAVYKPARSDKLADYKHRKIERKNKNTQLRILTCFHSARNIPSIINLLEASRGVEKGGKLCVYAMHLMELSERSSAILMVHKARKNGLPFWNKGLRSDSNHVIVAFEAYQQLSRVFIRPMTAISSMTDIHEDICATAKRKRTAIIILPFHKHQRMDGSLETTRSSIRLVNQNVLEHAPCSVGILIDRGLGGTTHISSSHVSLFITVLFFGGRDDREALSYGVRMAEHPGIRLMVIRFCIEPESVGEIISADTVGNSSASTVSQDDEFLSEFKHDVDENDSIIYEEKTIKSAADAMDTLQELKSCNLYIVGRTPDINATFALNRSDCPELGPVGNLLTSPNFSIAASVLVVQQYCSELSENSALDSAEGESESA 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6036165 6040421 + Sed0022850.1 Sed13g0817 734327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0817 799 Pfam Sodium/hydrogen exchanger family 47 425 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Sed13g0817 799 Gene3D - 35 438 IPR038770 -
Sed13g0817 799 PANTHER CATION/H + ANTIPORTER 11 787 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Sed13g0817 799 FunFam Cation/H(+) antiporter 15 35 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1579 Sed-Chr7:12630883 Sed13g0817 Sed-Chr13:6036165 1.60E-299 dispersed
Sed13g0817 Sed-Chr13:6036165 Sed14g0469 Sed-Chr14:4690056 5.40E-210 dispersed
Sed13g0816 Sed-Chr13:6035580 Sed13g0817 Sed-Chr13:6036165 0.00E+00 tandem
Sed13g0817 Sed-Chr13:6036165 Sed13g0818 Sed-Chr13:6036165 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0817 K26731 - csv:101223205 1372.45