Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0848 ATGGATGGAGACATGAATAATTCACAAATGGCAAGTTCTAGTTCTATCAATTACCAAAGCTTTGATGGTGGTGCTTGTGAAAATGATTGGGTTCATGGGCTTTTTTCTGATCATTATTCTTGTTTGAGTTTGGAGAAAGAGAAGGCAAGTGGATCAATTAGTGAGGGTGCAATGGCCATGGTGGATTATAATCATGAGGATGGAGAAAAAAATGAGGGTCATATTGGAGGGAAGAACAAAGGCAAAATTGTGATGGGAAAAAGAAGTGCAATGCCAAGAGTTGCTTTTCAGACAAGGAGTGATGAGGATGTTCTTGATGATGGCTATAGATGGAGGAAATATGGACAAAAGGCTGTTAAACATAGCACCCATCCGAGGAGTTATTACCGATGCACCCATCATACATGCAACGTTAAGAAACAAATTCAAAGGCATTCCAAGGATCCAACCATAGTTGTGACAACATATGAAGGAATTCACAACCATCCATCTGAAAAATTCATGGAAACTCTAAGCCCTCTTCTCAAGCAATTGCAGTTCCTTTCTGGCATTTAG 555 39.64 MDGDMNNSQMASSSSINYQSFDGGACENDWVHGLFSDHYSCLSLEKEKASGSISEGAMAMVDYNHEDGEKNEGHIGGKNKGKIVMGKRSAMPRVAFQTRSDEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKFMETLSPLLKQLQFLSGI 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6213979 6216160 - Sed0010819.1 Sed13g0848 734358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0848 184 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 65 163 IPR044810 GO:0003700(InterPro)
Sed13g0848 184 SMART WRKY_cls 105 164 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g0848 184 FunFam WRKY transcription factor 57 91 165 - -
Sed13g0848 184 SUPERFAMILY WRKY DNA-binding domain 97 164 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g0848 184 Pfam WRKY DNA -binding domain 106 163 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g0848 184 ProSiteProfiles WRKY domain profile. 100 165 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g0848 184 Gene3D WRKY domain 89 164 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1004 Sed-Chr2:47431827 Sed13g0848 Sed-Chr13:6213979 9.60E-31 dispersed
Sed12g0617 Sed-Chr12:3657534 Sed13g0848 Sed-Chr13:6213979 2.30E-27 dispersed
Sed13g0848 Sed-Chr13:6213979 Sed14g1557 Sed-Chr14:23766438 9.40E-25 dispersed
Sed13g0848 Sed-Chr13:6213979 Sed13g0849 Sed-Chr13:6219991 1.00E-13 tandem
Sed12g0130 Sed-Chr12:725907 Sed13g0848 Sed-Chr13:6213979 2.90E-36 transposed
Sed13g0848 Sed-Chr13:6213979 Sed07g1591 Sed-Chr7:12918683 4.80E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40389 PF03106 WRKY 9.80E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0848 - - - 0.0