Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0860 ATGGATTTTGGTAATTCCTCATCTAGATTCCCCCTAGAAAATCATCAATATGGATTTCAAACCAACAATGATTCAAGATCAGATTTAGAGCAGCATCCTCAACAAGTACAAGAAATGGACTCTAGCTCTCTTTTTATAGAGAAAGAGCACATGTTCGACAAAGTTGTGACTCCAAGCGATGTGGGAAAATTGAACCGTTTAGTCATCCCAAAGCAACACGCTGAAAAGTACTTCCCTTTGGATTCTTCATCCAACGAGAAGGGTCTTCTCTTGAACTTCGAGGACCGCACCGGCAAATCGTGGCGGTTTCGGTACTCGTACTGGACCAGCAGCCAGAGCTACGTGATGACCAAAGGCTGGAGCCGCTTTGTCAAAGAGAAGAGGCTTGATGCTGGTGATATCGTCTCTTTTCACCGAGGGCTTGGTGATGTCGGTAAAGATCGGTTTTTTATCGATTGGCGCCGCCGTCCGCCCCATGCGGTGGTCGACACGGCAGTTAATTTTCACCACGGTGGTGCTGCCGGCAGCCTGATTCCTCACCACTTTCAGCTTCACCAGTGGAGTCCTGTGGCTACACCCTTATCTTTACATAGGGACCACTTCAATAATGTTGGCCTAATTCATAATCATAACCCTTATTATAATAATCGTCTTCGTTATCATCCTTCCATCCATGATTCGTCGGTTTATTACCATCTAAGATCTGCCCCGCCACCTGTAGCAGTGCCGGTCGTGGCGGGTGGAAGTGGTGGAATTGGGAAAGGGGGTGGTGCTGCTAAGACATTGAGGCTTTTTGGGGTTGATGTGGAATGCGGAGTGTCTGAGGTTCGGTCAGATGATGAGTGTGACATAACAAACTCGACTACGACAATGTCGCCTCCATTTCACGTTTATAATGGAATGCCAATGTCGATGCCCATGTCGATGTCGAGTAGGGATGACATACCGACAATGGACTTTTTCGATAAAGGAAAGTCGTCGATGTCGTCCTTAGATTTTGGTACCTGA 1008 47.02 MDFGNSSSRFPLENHQYGFQTNNDSRSDLEQHPQQVQEMDSSSLFIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRTGKSWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFHRGLGDVGKDRFFIDWRRRPPHAVVDTAVNFHHGGAAGSLIPHHFQLHQWSPVATPLSLHRDHFNNVGLIHNHNPYYNNRLRYHPSIHDSSVYYHLRSAPPPVAVPVVAGGSGGIGKGGGAAKTLRLFGVDVECGVSEVRSDDECDITNSTTTMSPPFHVYNGMPMSMPMSMSSRDDIPTMDFFDKGKSSMSSLDFGT 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6369344 6373427 + Sed0019224.1 Sed13g0860 734370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0860 335 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 30 268 IPR044800 GO:0003700(InterPro)
Sed13g0860 335 SUPERFAMILY DNA-binding pseudobarrel domain 49 156 IPR015300 -
Sed13g0860 335 CDD B3_DNA 50 139 IPR003340 GO:0003677(InterPro)
Sed13g0860 335 Gene3D - 45 164 IPR015300 -
Sed13g0860 335 FunFam B3 domain-containing protein 45 166 - -
Sed13g0860 335 MobiDBLite consensus disorder prediction 1 34 - -
Sed13g0860 335 SMART B3_2 52 157 IPR003340 GO:0003677(InterPro)
Sed13g0860 335 Pfam B3 DNA binding domain 52 156 IPR003340 GO:0003677(InterPro)
Sed13g0860 335 ProSiteProfiles B3 DNA-binding domain profile. 52 157 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3764 Sed-Chr1:66773003 Sed13g0860 Sed-Chr13:6369344 6.10E-57 dispersed
Sed09g0569 Sed-Chr9:6384244 Sed13g0860 Sed-Chr13:6369344 2.70E-59 dispersed
Sed12g2296 Sed-Chr12:33147931 Sed13g0860 Sed-Chr13:6369344 5.10E-24 dispersed
Sed12g2297 Sed-Chr12:33147931 Sed13g0860 Sed-Chr13:6369344 5.10E-24 dispersed
Sed13g0860 Sed-Chr13:6369344 Sed13g0861 Sed-Chr13:6369344 3.40E-198 tandem
Sed04g1495 Sed-Chr4:29770121 Sed13g0860 Sed-Chr13:6369344 3.00E-37 transposed
Sed13g0860 Sed-Chr13:6369344 Sed07g1608 Sed-Chr7:13190640 5.70E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40391 PF02362 B3 4.20E-29 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0860 K09287 - csv:101220139 351.673