Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0861 ATGGATTTTGGTAATTCCTCATCTAGATTCCCCCTAGAAAATCATCAATATGGATTTCAAACCAACAATGATTCAAGATCAGATTTAGAGCAGCATCCTCAACAAGTACAAGAAATGGACTCTAGCTCTCTTTTTATAGAGAAAGAGCACATGTTCGACAAAGTTGTGACTCCAAGCGATGTGGGAAAATTGAACCGTTTAGTCATCCCAAAGCAACACGCTGAAAAGTACTTCCCTTTGGATTCTTCATCCAACGAGAAGGGTCTTCTCTTGAACTTCGAGGACCGCACCGGCAAATCGTGGCGGTTTCGGTACTCGTACTGGACCAGCAGCCAGAGCTACGTGATGACCAAAGGCTGGAGCCGCTTTGTCAAAGAGAAGAGGCTTGATGCTGGTGATATCGTCTCTTTTCACCGAGGGCTTGGTGATGTCGGTAAAGATCGGTTTTTTATCGATTGGCGCCGCCGTCCGCCCCATGCGGTGGTCGACACGGCAGTTAATTTTCACCACGGTGGTGCTGCCGGCAGCCTGATTCCTCACCACTTTCAGCTTCACCAGTGGAGTCCTGTGGCTACACCCTTATCTTTACATAGGGACCACTTCAATAATGTTGGCCTAATTCATAATCATAACCCTTATTATAATAATCGTCTTCGTTATCATCCTTCCATCCATGATTCGTCGGTTTATTACCATCTAAGATCTGCCCCGCCACCTGTAGCAGTGCCGGTCGTGGCGGGTGGAAGTGGTGGAATTGGGAAAGGGGGTGGTGCTGCTAAGACATTGAGGCTTTTTGGGGTTGATGTGGAATGCGGAGTGTCTGAGGTTCGGTCAGATGATGAGTGTGACATAACAAACTCGACTACGACAATGTCGCCTCCATTTCACGTTTATAATGGAATGCCAATGTCGATGCCCATGTCGATGTCGAGTAGGGATGACATACCGACAATGGACTTTTTCGATAAAGGAAAGTCGTCGATGTCGTCCTTAGATTTTGGTACCTGA 1008 47.02 MDFGNSSSRFPLENHQYGFQTNNDSRSDLEQHPQQVQEMDSSSLFIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRTGKSWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFHRGLGDVGKDRFFIDWRRRPPHAVVDTAVNFHHGGAAGSLIPHHFQLHQWSPVATPLSLHRDHFNNVGLIHNHNPYYNNRLRYHPSIHDSSVYYHLRSAPPPVAVPVVAGGSGGIGKGGGAAKTLRLFGVDVECGVSEVRSDDECDITNSTTTMSPPFHVYNGMPMSMPMSMSSRDDIPTMDFFDKGKSSMSSLDFGT 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6369344 6371471 + Sed0019224.2 Sed13g0861 734371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0861 335 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 30 268 IPR044800 GO:0003700(InterPro)
Sed13g0861 335 SUPERFAMILY DNA-binding pseudobarrel domain 49 156 IPR015300 -
Sed13g0861 335 CDD B3_DNA 50 139 IPR003340 GO:0003677(InterPro)
Sed13g0861 335 Gene3D - 45 164 IPR015300 -
Sed13g0861 335 FunFam B3 domain-containing protein 45 166 - -
Sed13g0861 335 MobiDBLite consensus disorder prediction 1 34 - -
Sed13g0861 335 SMART B3_2 52 157 IPR003340 GO:0003677(InterPro)
Sed13g0861 335 Pfam B3 DNA binding domain 52 156 IPR003340 GO:0003677(InterPro)
Sed13g0861 335 ProSiteProfiles B3 DNA-binding domain profile. 52 157 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1495 Sed-Chr4:29770121 Sed13g0861 Sed-Chr13:6369344 3.00E-37 dispersed
Sed07g1608 Sed-Chr7:13190640 Sed13g0861 Sed-Chr13:6369344 3.10E-128 dispersed
Sed13g0860 Sed-Chr13:6369344 Sed13g0861 Sed-Chr13:6369344 3.40E-198 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40392 PF02362 B3 4.20E-29 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0861 K09287 - csv:101220139 351.673