Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g0882 ATGAGAACACTTTGTGACGCTTGTGAAAGCGCTGCTGCTATTGTCTTTTGTGCTGCTGACGAAGCCGCCCTTTGCCGTTCTTGTGACGAGAAGGTCCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAGTCCCAGTGATGTTCCTCGTTGTGATATATGTGAGAATGCGCCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTACGGCAGAGGGTCGAGTTTCCAGATGACAAACGTATAAATCCTGATGAGCCGTCTCCACATTCCAAGGTTCCCAATGACAGTGGCAAAGGAAATAATCAGCCACTGCCCCATAAAGTGACTGTGGAAAACAACCATCAAAATTATCATCGACTATCACCTGTTCAGGAGGTTAACGATGATGGTCATGCCGAGCCTGATACGAAAATGATCGATTTGAATATGAAGCCTCAAAGGGTCCATGGGCAGGCTGCTAATAATCAGGATCCATGTTCATGA 567 45.15 MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPDDKRINPDEPSPHSKVPNDSGKGNNQPLPHKVTVENNHQNYHRLSPVQEVNDDGHAEPDTKMIDLNMKPQRVHGQAANNQDPCS 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6542274 6546229 + Sed0002194.1 Sed13g0882 734392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g0882 188 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Sed13g0882 188 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Sed13g0882 188 SUPERFAMILY B-box zinc-binding domain 48 88 - -
Sed13g0882 188 FunFam B-box zinc finger protein 19 2 92 - -
Sed13g0882 188 MobiDBLite consensus disorder prediction 121 150 - -
Sed13g0882 188 CDD Bbox1_BBX-like 4 47 IPR049808 -
Sed13g0882 188 MobiDBLite consensus disorder prediction 152 170 - -
Sed13g0882 188 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Sed13g0882 188 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 172 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Sed13g0882 188 Gene3D Classic Zinc Finger 2 96 - -
Sed13g0882 188 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270(InterPro)
Sed13g0882 188 CDD Bbox1_BBX-like 56 96 IPR049808 -
Sed13g0882 188 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270(InterPro)
Sed13g0882 188 Pfam B-box zinc finger 3 41 IPR000315 GO:0008270(InterPro)
Sed13g0882 188 MobiDBLite consensus disorder prediction 106 188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0979 Sed-Chr10:8219527 Sed13g0882 Sed-Chr13:6542274 2.10E-48 dispersed
Sed10g0980 Sed-Chr10:8219527 Sed13g0882 Sed-Chr13:6542274 8.80E-34 dispersed
Sed13g0634 Sed-Chr13:4329231 Sed13g0882 Sed-Chr13:6542274 4.60E-21 dispersed
Sed13g0882 Sed-Chr13:6542274 Sed07g1631 Sed-Chr7:13776784 7.50E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40393 PF00643 zf-B_box 2.40E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g0882 - - - 0.0